IDConflictResolverAlgorithm Class Reference

#include <OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h>

Static Public Member Functions
static void	resolve (FeatureMap &features)
	Resolves ambiguous annotations of features with peptide identifications. The the filtered identifications are added to the vector of unassigned peptides and also reduced to a single best hit. More...
static void	resolve (ConsensusMap &features)
	Resolves ambiguous annotations of consensus features with peptide identifications. The the filtered identifications are added to the vector of unassigned peptides and also reduced to a single best hit. More...
static void	resolveBetweenFeatures (FeatureMap &features)
	In a single (feature/consensus) map, features with the same (possibly modified) sequence and charge state may appear. This filter removes the peptide sequence annotations from features, if a higher-intensity feature with the same (charge, sequence) combination exists in the map. The total number of features remains unchanged. In the final output, each (charge, sequence) combination appears only once, i.e. no multiplicities. More...
static void	resolveBetweenFeatures (ConsensusMap &features)
	In a single (feature/consensus) map, features with the same (possibly modified) sequence and charge state may appear. This filter removes the peptide sequence annotations from features, if a higher-intensity feature with the same (charge, sequence) combination exists in the map. The total number of features remains unchanged. In the final output, each (charge, sequence) combination appears only once, i.e. no multiplicities. More...

Static Protected Member Functions
template<class T >
static void	resolveConflict_ (T &map)
static bool	compareIDsSmallerScores_ (const PeptideIdentification &left, const PeptideIdentification &right)
static void	resolveConflict_ (vector< PeptideIdentification > &peptides, vector< PeptideIdentification > &removed, UInt64 uid)
template<class T >
static void	resolveBetweenFeatures_ (T &map)

Member Function Documentation

compareIDsSmallerScores_()

static bool compareIDsSmallerScores_ ( const PeptideIdentification &  left, const PeptideIdentification &  right  )

staticprotected

resolve() [1/2]

static void resolve ( FeatureMap &  features )

static

Resolves ambiguous annotations of features with peptide identifications. The the filtered identifications are added to the vector of unassigned peptides and also reduced to a single best hit.

resolve() [2/2]

static void resolve ( ConsensusMap &  features )

static

Resolves ambiguous annotations of consensus features with peptide identifications. The the filtered identifications are added to the vector of unassigned peptides and also reduced to a single best hit.

resolveBetweenFeatures() [1/2]

static void resolveBetweenFeatures ( FeatureMap &  features )

static

In a single (feature/consensus) map, features with the same (possibly modified) sequence and charge state may appear. This filter removes the peptide sequence annotations from features, if a higher-intensity feature with the same (charge, sequence) combination exists in the map. The total number of features remains unchanged. In the final output, each (charge, sequence) combination appears only once, i.e. no multiplicities.

resolveBetweenFeatures() [2/2]

static void resolveBetweenFeatures ( ConsensusMap &  features )

static

In a single (feature/consensus) map, features with the same (possibly modified) sequence and charge state may appear. This filter removes the peptide sequence annotations from features, if a higher-intensity feature with the same (charge, sequence) combination exists in the map. The total number of features remains unchanged. In the final output, each (charge, sequence) combination appears only once, i.e. no multiplicities.

resolveBetweenFeatures_()

static void resolveBetweenFeatures_ ( T &  map )

inlinestaticprotected

References PeptideHit::getSequence().

resolveConflict_() [1/2]

static void resolveConflict_ ( T &  map )

inlinestaticprotected

References OpenMS::Constants::c.

resolveConflict_() [2/2]

static void resolveConflict_ ( vector< PeptideIdentification > &  peptides, vector< PeptideIdentification > &  removed, UInt64  uid  )

staticprotected