OPXLDataStructs Class Reference

#include <OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h>

Classes
struct	AASeqWithMass
	The AASeqWithMass struct represents a normal peptide with its precomputed mass. More...
struct	AASeqWithMassComparator
	The AASeqWithMassComparator is a comparator for AASeqWithMass objects. More...
struct	CLSMScoreComparator
	Comparator to sort CrossLinkSpectrumMatches by the main score. More...
struct	CrossLinkSpectrumMatch
	The CrossLinkSpectrumMatch struct represents a PSM between a ProteinProteinCrossLink and a spectrum in OpenPepXL. More...
struct	PreprocessedPairSpectra
	The PreprocessedPairSpectra struct represents the result of comparing a light and a heavy labeled spectra to each other. More...
struct	ProteinProteinCrossLink
	The ProteinProteinCrossLink struct represents a cross-link between two peptides in OpenPepXL. More...
struct	XLPrecursor
	The XLPrecursor struct represents a cross-link candidate in the process of filtering candidates by precursor masses in OpenPepXL. More...
struct	XLPrecursorComparator
	The XLPrecursorComparator is a comparator for XLPrecursors, that allows direct comparison of the XLPrecursor precursor mass with double numbers. More...

Public Types
enum	ProteinProteinCrossLinkType { CROSS = 0, MONO = 1, LOOP = 2, NUMBER_OF_CROSS_LINK_TYPES }
	The ProteinProteinCrossLinkType enum enumerates possible types of Protein-Protein cross-linking reaction results. Cross-link, Mono-link or Loop-link. More...
enum	PeptidePosition { INTERNAL = 0, C_TERM = 1, N_TERM = 2 }
	The PeptidePosition enum. More...

Member Enumeration Documentation

PeptidePosition

enum PeptidePosition

The PeptidePosition enum.

Used to record the positions of peptides in proteins after in silico digestion determine whether protein terminal modifications are possible on a peptide.

Enumerator
INTERNAL
C_TERM
N_TERM

ProteinProteinCrossLinkType

enum ProteinProteinCrossLinkType

The ProteinProteinCrossLinkType enum enumerates possible types of Protein-Protein cross-linking reaction results. Cross-link, Mono-link or Loop-link.

Enumerator
CROSS
MONO
LOOP
NUMBER_OF_CROSS_LINK_TYPES