Widget for 2D-visualization of peak map and feature map data. More...

#include <OpenMS/VISUAL/Spectrum2DWidget.h>

Inheritance diagram for Spectrum2DWidget:

Public Types
typedef LayerData::ExperimentSharedPtrType	ExperimentSharedPtrType
	Main managed data type (experiment) More...

Public Types inherited from SpectrumWidget
typedef LayerData::ExperimentType	ExperimentType
	Main data type (experiment) More...

typedef LayerData::FeatureMapType	FeatureMapType
	Main data type (features) More...

typedef ExperimentType::SpectrumType	SpectrumType
	Spectrum type. More...

Public Slots
void	recalculateAxes_ () override

void	toggleProjections ()
	Shows/hides the projections. More...

void	updateProjections ()
	Updates and shows the projections. More...

void	showGoToDialog () override

Public Slots inherited from SpectrumWidget
void	showStatistics ()
	Shows statistics about the data (count, min, max, avg of intensity, charge, quality and meta data) More...

void	showIntensityDistribution ()
	Shows the intensity distribution of the current layer. More...

void	showMetaDistribution (const String &name)
	Shows the meta data distribution of value `name` of the current layer. More...

void	updateAxes ()
	Updates the axes by setting the right labels and calling recalculateAxes_();. More...

void	updateHScrollbar (float min, float disp_min, float disp_max, float max)
	Updates the horizontal scrollbar. More...

void	updateVScrollbar (float min, float disp_min, float disp_max, float max)
	Updates the vertical scrollbar. More...

virtual void	showGoToDialog ()=0
	Shows a goto dialog. More...

void	changeLegendVisibility ()
	Toggles the axis legend visibility. More...

Signals
void	visibleAreaChanged (DRange< 2 > area)
	Signal emitted whenever the visible area changes. More...

void	showSpectrumAs1D (int index)
	Requests to display the spectrum with index `index` in 1D. More...

void	showSpectrumAs1D (std::vector< int, std::allocator< int > > indices)

void	showCurrentPeaksAs3D ()
	Requests to display all spectra as 1D. More...

Signals inherited from SpectrumWidget
void	sendStatusMessage (std::string, OpenMS::UInt)
	Emits a status message that should be displayed for `time` ms. If `time` is 0 the message should be displayed until the next message is emitted. More...

void	sendCursorStatus (double mz=-1.0, double rt=-1.0)
	Emitted when the cursor position changes (for displaying e.g. in status bar) More...

void	aboutToBeDestroyed (int window_id)
	Message about the destruction of this widget. More...

void	openPreferences ()
	Shows the main preferences dialog. More...

void	dropReceived (const QMimeData data, QWidget source, int id)
	Signal that is emitted, when a drag-and-drop action ends on this widget. More...

Public Member Functions
	Spectrum2DWidget (const Param &preferences, QWidget *parent=nullptr)
	Default constructor. More...

	~Spectrum2DWidget () override
	Destructor. More...

Spectrum2DCanvas *	canvas ()
	This method is overwritten to make the class specific members accessible. More...

const Spectrum1DWidget *	getHorizontalProjection () const
	const reference to the horizontal projection More...

const Spectrum1DWidget *	getVerticalProjection () const
	const reference to the vertical projection More...

bool	projectionsVisible () const
	Returns if one of the projections is visible (or both are visible) More...

Public Member Functions inherited from SpectrumWidget
	SpectrumWidget (const Param &preferences, QWidget *parent=nullptr)
	Default constructor. More...

	~SpectrumWidget () override
	Destructor. More...

SpectrumCanvas *	canvas ()
	Returns a pointer to canvas object. More...

SpectrumCanvas *	canvas () const

virtual AxisWidget *	xAxis ()
	Returns a pointer to the x-axis axis widget. More...

virtual AxisWidget *	yAxis ()
	Returns a pointer to the y-axis axis widget. More...

Int	getActionMode () const
	Get the mouse action mode. More...

virtual bool	isLegendShown () const
	Returns if the axis labels are shown. More...

virtual void	showLegend (bool show)
	Shows/hides axis labels. More...

void	setIntensityMode (SpectrumCanvas::IntensityModes mode)
	Sets the intensity mode of the SpectrumCanvas. More...

virtual void	hideAxes ()
	Hides x-axis and y-axis. More...

virtual void	saveAsImage ()
	Saves the widget's content as image file. More...

Int	getWindowId () override
	getter for the EnhancedTabBar window id as defined in the interface More...

void	setWindowId (Int window_id) override
	setter for the EnhancedTabBar window id as defined in the interface More...

Public Member Functions inherited from EnhancedTabBarWidgetInterface
virtual	~EnhancedTabBarWidgetInterface ()
	Destructor. More...

Protected Member Functions
Math::Histogram	createIntensityDistribution_ () const override
	creates the intensity distribution of the current layer More...

Math::Histogram	createMetaDistribution_ (const String &name) const override
	creates the meta data distribution of value `name` of the current layer More...

Protected Member Functions inherited from SpectrumWidget
void	setCanvas_ (SpectrumCanvas *canvas, UInt row=0, UInt col=2)
	Adds the canvas, axes and scrollbars to the layout. More...

virtual void	intensityModeChange_ ()
	Switch between different intensity modes. More...

virtual void	recalculateAxes_ ()=0
	recalculates the Axis ticks More...

void	correctAreaToObeyMinMaxRanges_ (SpectrumCanvas::AreaType &area)
	correct given area X/Y-values if the values under-/overflow the min-/max values of the data More...

void	closeEvent (QCloseEvent *e) override

void	dragEnterEvent (QDragEnterEvent *event) override

void	dragMoveEvent (QDragMoveEvent *event) override

void	dropEvent (QDropEvent *event) override

Protected Attributes
Spectrum1DWidget *	projection_vert_
	Vertical projection widget. More...

Spectrum1DWidget *	projection_horz_
	Horizontal projection widget. More...

QGroupBox *	projection_box_
	Group box that shows information about the projections. More...

QLabel *	projection_peaks_
	Number of peaks of the projection. More...

QLabel *	projection_sum_
	Intensity sum of the projection. More...

QLabel *	projection_max_
	Intensity maximum of the projection. More...

QCheckBox *	projections_auto_
	Checkbox that indicates that projections should be automatically updated (with a slight delay) More...

QTimer *	projections_timer_
	Timer that triggers auto-update of projections. More...

Protected Attributes inherited from SpectrumWidget
SpectrumCanvas *	canvas_
	Pointer to the canvas widget. More...

QGridLayout *	grid_
	Main layout. More...

AxisWidget *	y_axis_
	Vertical axis. More...

AxisWidget *	x_axis_
	Horizontal axis. More...

QScrollBar *	x_scrollbar_
	Horizontal scrollbar. More...

QScrollBar *	y_scrollbar_
	Vertical scrollbar. More...

Int	window_id_

Private Slots
void	horizontalProjection (ExperimentSharedPtrType exp)
	shows the horizontal projection with the given data and draw mode More...

void	verticalProjection (ExperimentSharedPtrType exp)
	shows the vertical projection with the given data and draw mode More...

void	projectionInfo (int peaks, double intensity, double max)
	shows projections information More...

void	autoUpdateProjections ()
	slot that monitors the visible area changes and triggers the update of projections More...

Detailed Description

Widget for 2D-visualization of peak map and feature map data.

The widget is composed of two scroll bars, two AxisWidget and a Spectrum2DCanvas as central widget.

The example image shows Spectrum2DWidget displaying a peak layer and a feature layer.

Member Typedef Documentation

◆ ExperimentSharedPtrType

typedef LayerData::ExperimentSharedPtrType ExperimentSharedPtrType

Main managed data type (experiment)

Constructor & Destructor Documentation

◆ Spectrum2DWidget()

Spectrum2DWidget	(	const Param &	preferences,
		QWidget *	parent = `nullptr`
	)

Default constructor.

◆ ~Spectrum2DWidget()

~Spectrum2DWidget ( )

override

Destructor.

Member Function Documentation

◆ autoUpdateProjections

void autoUpdateProjections ( )

privateslot

slot that monitors the visible area changes and triggers the update of projections

◆ canvas()

Spectrum2DCanvas* canvas ( )

inline

This method is overwritten to make the class specific members accessible.

Referenced by TOPPViewBase::changeLabel(), TOPPViewBase::changeUnassigned(), TOPPViewBase::showCurrentPeaksAs2D(), TOPPViewBase::showCurrentPeaksAsDIA(), TOPPViewBase::showCurrentPeaksAsIonMobility(), and TOPPViewBase::updateToolBar().

◆ createIntensityDistribution_()

Math::Histogram createIntensityDistribution_ ( ) const

overrideprotectedvirtual

creates the intensity distribution of the current layer

Implements SpectrumWidget.

◆ createMetaDistribution_()

Math::Histogram createMetaDistribution_ ( const String & name ) const

overrideprotectedvirtual

creates the meta data distribution of value name of the current layer

Implements SpectrumWidget.

◆ getHorizontalProjection()

const Spectrum1DWidget* getHorizontalProjection ( ) const

const reference to the horizontal projection

Referenced by TOPPViewBase::showSpectrumWidgetInWindow().

◆ getVerticalProjection()

const Spectrum1DWidget* getVerticalProjection ( ) const

const reference to the vertical projection

Referenced by TOPPViewBase::showSpectrumWidgetInWindow().

◆ horizontalProjection

void horizontalProjection ( ExperimentSharedPtrType exp )

privateslot

shows the horizontal projection with the given data and draw mode

◆ projectionInfo

void projectionInfo	(	int	peaks,
		double	intensity,
		double	max
	)

privateslot

shows projections information

◆ projectionsVisible()

bool projectionsVisible ( ) const

Returns if one of the projections is visible (or both are visible)

Referenced by TOPPViewBase::toggleProjections().

◆ recalculateAxes_

void recalculateAxes_ ( )

overrideslot

◆ showCurrentPeaksAs3D

void showCurrentPeaksAs3D ( )

signal

Requests to display all spectra as 1D.

◆ showGoToDialog

void showGoToDialog ( )

overrideslot

◆ showSpectrumAs1D [1/2]

void showSpectrumAs1D ( int index )

signal

Requests to display the spectrum with index index in 1D.

◆ showSpectrumAs1D [2/2]

void showSpectrumAs1D ( std::vector< int, std::allocator< int > > indices )

signal

◆ toggleProjections

void toggleProjections ( )

slot

Shows/hides the projections.

Referenced by TOPPViewBase::toggleProjections().

◆ updateProjections

void updateProjections ( )

slot

Updates and shows the projections.

◆ verticalProjection

void verticalProjection ( ExperimentSharedPtrType exp )

privateslot

shows the vertical projection with the given data and draw mode

◆ visibleAreaChanged

void visibleAreaChanged ( DRange< 2 > area )

signal

Signal emitted whenever the visible area changes.

Parameters

area	The new visible area.

Member Data Documentation

◆ projection_box_

QGroupBox* projection_box_

protected

Group box that shows information about the projections.

◆ projection_horz_

Spectrum1DWidget* projection_horz_

protected

Horizontal projection widget.

◆ projection_max_

QLabel* projection_max_

protected

Intensity maximum of the projection.

◆ projection_peaks_

QLabel* projection_peaks_

protected

Number of peaks of the projection.

◆ projection_sum_

QLabel* projection_sum_

protected

Intensity sum of the projection.

◆ projection_vert_

Spectrum1DWidget* projection_vert_

protected

Vertical projection widget.

◆ projections_auto_

QCheckBox* projections_auto_

protected

Checkbox that indicates that projections should be automatically updated (with a slight delay)

◆ projections_timer_

QTimer* projections_timer_

protected

Timer that triggers auto-update of projections.

Public Types

Public Slots

Signals

Public Member Functions

Protected Member Functions

Protected Attributes

Private Slots

Detailed Description

Member Typedef Documentation

◆ ExperimentSharedPtrType

Constructor & Destructor Documentation

◆ Spectrum2DWidget()

◆ ~Spectrum2DWidget()

Member Function Documentation

◆ autoUpdateProjections

◆ canvas()

◆ createIntensityDistribution_()

◆ createMetaDistribution_()

◆ getHorizontalProjection()

◆ getVerticalProjection()

◆ horizontalProjection

◆ projectionInfo

◆ projectionsVisible()

◆ recalculateAxes_

◆ showCurrentPeaksAs3D

◆ showGoToDialog

◆ showSpectrumAs1D [1/2]

◆ showSpectrumAs1D [2/2]

◆ toggleProjections

◆ updateProjections

◆ verticalProjection

◆ visibleAreaChanged

Member Data Documentation

◆ projection_box_

◆ projection_horz_

◆ projection_max_

◆ projection_peaks_

◆ projection_sum_

◆ projection_vert_

◆ projections_auto_

◆ projections_timer_