Class to read a file describing the Swath Windows. More...

Static Public Member Functions
static void	annotateSwathMapsFromFile (const std::string &filename, std::vector< OpenSwath::SwathMap > &swath_maps, bool doSort)
	Annotate a Swath map using a Swath window file specifying the individual windows. More...

static void	readSwathWindows (const std::string &filename, std::vector< double > &swath_prec_lower_, std::vector< double > &swath_prec_upper_)
	Reading a tab delimited file specifying the SWATH windows. More...

Detailed Description

Class to read a file describing the Swath Windows.

The file must of be tab delimited and of the following format: window_lower window_upper 400 425 425 450 ...

Note that the first line is a header and will be skipped.

Member Function Documentation

static void annotateSwathMapsFromFile	(	const std::string &	filename,
		std::vector< OpenSwath::SwathMap > &	swath_maps,
		bool	doSort
	)

static

Annotate a Swath map using a Swath window file specifying the individual windows.

Note: It is assumed that the files in the swath_maps vector are in the same order as the windows in the provided file (usually from lowest to highest).

Parameters

filename	The filename of the tab delimited file
swath_maps	The list of SWATH maps (assumed to be in the same order as in the file)
doSort	Sort the windows after reading in ascending order

Exceptions

Exception::IllegalArgument if the maps in the file and the provided input maps to not match

static void readSwathWindows	(	const std::string &	filename,
		std::vector< double > &	swath_prec_lower_,
		std::vector< double > &	swath_prec_upper_
	)

static

Reading a tab delimited file specifying the SWATH windows.

The file must of be tab delimited and of the following format: window_lower window_upper 400 425 425 450 ...

Note that the first line is a header and will be skipped.

Parameters

filename	The filename of the tab delimited file
swath_prec_lower_	The output vector for the window start
swath_prec_upper_	The output vector for the window end