TransformationModel Class Reference

Base class for transformation models. More...

#include <OpenMS/ANALYSIS/MAPMATCHING/TransformationModel.h>

Inheritance diagram for TransformationModel:

Classes
struct	DataPoint
	Coordinate pair (with optional annotation) More...

Public Types
typedef std::vector< DataPoint >	DataPoints
	Vector of coordinate pairs. More...

Public Member Functions
	TransformationModel ()
	Constructor. More...
	TransformationModel (const TransformationModel::DataPoints &, const Param &)
virtual	~TransformationModel ()
	Destructor. More...
virtual double	evaluate (double value) const
	Evaluates the model at the given value. More...
virtual void	weightData (DataPoints &data)
	Weight the data by the given weight function. More...
virtual void	unWeightData (DataPoints &data)
	Unweight the data by the given weight function. More...
bool	checkValidWeight (const String &weight, const std::vector< String > &valid_weights) const
	Check for a valid weighting function string. More...
double	checkDatumRange (const double &datum, const double &datum_min, const double &datum_max)
	Check that the datum is within the valid min and max bounds. More...
double	weightDatum (const double &datum, const String &weight) const
	Weight the data according to the weighting function. More...
double	unWeightDatum (const double &datum, const String &weight) const
	Apply the reverse of the weighting function to the data. More...
const Param &	getParameters () const
	Gets the (actual) parameters. More...
std::vector< String >	getValidXWeights () const
	Returns a list of valid x weight function strings. More...
std::vector< String >	getValidYWeights () const
	Returns a list of valid y weight function strings. More...

Static Public Member Functions
static void	getDefaultParameters (Param &params)
	Gets the default parameters. More...

Protected Attributes
Param	params_
	Parameters. More...
String	x_weight_
	x weighting More...
double	x_datum_min_
double	x_datum_max_
String	y_weight_
	y weighting More...
double	y_datum_min_
double	y_datum_max_
bool	weighting_

Private Member Functions
	TransformationModel (const TransformationModel &)
	do not allow copy More...
const TransformationModel &	operator= (const TransformationModel &)
	do not allow assignment More...

Detailed Description

Base class for transformation models.

Implements the identity (no transformation). Parameters and data are ignored.

Note that this class and its derived classes do not allow copying/assignment, due to the need for internal memory management associated with some of the transformation models.

Member Typedef Documentation

DataPoints

typedef std::vector<DataPoint> DataPoints

Vector of coordinate pairs.

Constructor & Destructor Documentation

TransformationModel() [1/3]

TransformationModel ( )

inline

Constructor.

TransformationModel() [2/3]

TransformationModel	(	const TransformationModel::DataPoints &	,
		const Param &
	)

Alternative constructor (derived classes should implement this one!) Both data and params must be provided, since some derived classes require both to create a model!

~TransformationModel()

virtual ~TransformationModel ( )

virtual

Destructor.

TransformationModel() [3/3]

TransformationModel ( const TransformationModel &  )

private

do not allow copy

Member Function Documentation

checkDatumRange()

double checkDatumRange	(	const double &	datum,
		const double &	datum_min,
		const double &	datum_max
	)

Check that the datum is within the valid min and max bounds.

The method checks if the datum is within the user specified min and max bounds. If the datum is below the min bounds, the min bound is returned. If the datum is above the max bounds, the max bound is returned.

checkValidWeight()

bool checkValidWeight	(	const String &	weight,
		const std::vector< String > &	valid_weights
	)		const

Check for a valid weighting function string.

evaluate()

virtual double evaluate ( double  value ) const

virtual

Evaluates the model at the given value.

Reimplemented in TransformationModelInterpolated, TransformationModelLinear, TransformationModelBSpline, and TransformationModelLowess.

getDefaultParameters()

static void getDefaultParameters ( Param &  params )

static

Gets the default parameters.

getParameters()

const Param& getParameters

(

)

const

Gets the (actual) parameters.

getValidXWeights()

std::vector<String> getValidXWeights

(

)

const

Returns a list of valid x weight function strings.

getValidYWeights()

std::vector<String> getValidYWeights

(

)

const

Returns a list of valid y weight function strings.

operator=()

const TransformationModel& operator= ( const TransformationModel &  )

private

do not allow assignment

unWeightData()

virtual void unWeightData ( DataPoints &  data )

virtual

Unweight the data by the given weight function.

unWeightDatum()

double unWeightDatum	(	const double &	datum,
		const String &	weight
	)		const

Apply the reverse of the weighting function to the data.

weightData()

virtual void weightData ( DataPoints &  data )

virtual

Weight the data by the given weight function.

Currently supported valid weighting functions include the following:

• 1 / x.
• 1 / x2.
• 1 / y.
• 1 / y2.
• ln x.
• ln y. Note that the user needs to ensure valid bounds for the data by setting the x_datum_min/x_datum_max and y_datum_min/y_datum_max params.

weightDatum()

double weightDatum	(	const double &	datum,
		const String &	weight
	)		const

Weight the data according to the weighting function.

Member Data Documentation

params_

Param params_

protected

Parameters.

weighting_

bool weighting_

protected

x_datum_max_

double x_datum_max_

protected

x_datum_min_

double x_datum_min_

protected

x_weight_

String x_weight_

protected

x weighting

y_datum_max_

double y_datum_max_

protected

y_datum_min_

double y_datum_min_

protected

y_weight_

String y_weight_

protected

y weighting