Search parameters of the DB search. More...

#include <OpenMS/METADATA/ProteinIdentification.h>

Inheritance diagram for ProteinIdentification::SearchParameters:

Public Member Functions
	SearchParameters ()

bool	operator== (const SearchParameters &rhs) const

bool	operator!= (const SearchParameters &rhs) const

Public Member Functions inherited from MetaInfoInterface
	MetaInfoInterface ()
	Constructor. More...

	MetaInfoInterface (const MetaInfoInterface &rhs)
	Copy constructor. More...

	~MetaInfoInterface ()
	Destructor. More...

MetaInfoInterface &	operator= (const MetaInfoInterface &rhs)
	Assignment operator. More...

bool	operator== (const MetaInfoInterface &rhs) const
	Equality operator. More...

bool	operator!= (const MetaInfoInterface &rhs) const
	Equality operator. More...

const DataValue &	getMetaValue (const String &name) const
	Returns the value corresponding to a string (or DataValue::EMPTY if not found) More...

const DataValue &	getMetaValue (UInt index) const
	Returns the value corresponding to an index (or DataValue::EMPTY if not found) More...

bool	metaValueExists (const String &name) const
	Returns whether an entry with the given name exists. More...

bool	metaValueExists (UInt index) const
	Returns whether an entry with the given index exists. More...

void	setMetaValue (const String &name, const DataValue &value)
	Sets the DataValue corresponding to a name. More...

void	setMetaValue (UInt index, const DataValue &value)
	Sets the DataValue corresponding to an index. More...

void	removeMetaValue (const String &name)
	Removes the DataValue corresponding to `name` if it exists. More...

void	removeMetaValue (UInt index)
	Removes the DataValue corresponding to `index` if it exists. More...

void	getKeys (std::vector< String > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

void	getKeys (std::vector< UInt > &keys) const
	Fills the given vector with a list of all keys for which a value is set. More...

bool	isMetaEmpty () const
	Returns if the MetaInfo is empty. More...

void	clearMetaInfo ()
	Removes all meta values. More...

Public Attributes
String	db
	The used database. More...

String	db_version
	The database version. More...

String	taxonomy
	The taxonomy restriction. More...

String	charges
	The allowed charges for the search. More...

PeakMassType	mass_type
	Mass type of the peaks. More...

std::vector< String >	fixed_modifications
	Used fixed modifications. More...

std::vector< String >	variable_modifications
	Allowed variable modifications. More...

UInt	missed_cleavages
	The number of allowed missed cleavages. More...

double	fragment_mass_tolerance
	Mass tolerance of fragment ions (Dalton or ppm) More...

bool	fragment_mass_tolerance_ppm
	Mass tolerance unit of fragment ions (true: ppm, false: Dalton) More...

double	precursor_mass_tolerance
	Mass tolerance of precursor ions (Dalton or ppm) More...

bool	precursor_mass_tolerance_ppm
	Mass tolerance unit of precursor ions (true: ppm, false: Dalton) More...

Protease	digestion_enzyme
	The cleavage site information in details (from ProteaseDB) More...

Additional Inherited Members
Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistry &	metaRegistry ()
	Returns a reference to the MetaInfoRegistry. More...

Protected Member Functions inherited from MetaInfoInterface
void	createIfNotExists_ ()
	Creates the MetaInfo object if it does not exist. More...

Protected Attributes inherited from MetaInfoInterface
MetaInfo *	meta_
	Pointer to the MetaInfo object (0 by default) More...