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OpenMS
2.5.0
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Meta data for the association between an identified molecule (e.g. peptide) and a parent molecule (e.g. protein). More...
#include <OpenMS/METADATA/ID/MoleculeParentMatch.h>
Public Member Functions | |
MoleculeParentMatch (Size start_pos=UNKNOWN_POSITION, Size end_pos=UNKNOWN_POSITION, String left_neighbor=UNKNOWN_NEIGHBOR, String right_neighbor=UNKNOWN_NEIGHBOR) | |
bool | operator< (const MoleculeParentMatch &other) const |
bool | operator== (const MoleculeParentMatch &other) const |
bool | hasValidPositions (Size molecule_length=0, Size parent_length=0) const |
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MetaInfoInterface () | |
Constructor. More... | |
MetaInfoInterface (const MetaInfoInterface &rhs) | |
Copy constructor. More... | |
MetaInfoInterface (MetaInfoInterface &&) noexcept | |
Move constructor. More... | |
~MetaInfoInterface () | |
Destructor. More... | |
MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
Assignment operator. More... | |
MetaInfoInterface & | operator= (MetaInfoInterface &&) noexcept |
Move assignment operator. More... | |
bool | operator== (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
bool | operator!= (const MetaInfoInterface &rhs) const |
Equality operator. More... | |
const DataValue & | getMetaValue (const String &name, const DataValue &default_value=DataValue::EMPTY) const |
Returns the value corresponding to a string, or a default value (default: DataValue::EMPTY) if not found. More... | |
const DataValue & | getMetaValue (UInt index, const DataValue &default_value=DataValue::EMPTY) const |
Returns the value corresponding to an index, or a default value (default: DataValue::EMPTY) if not found. More... | |
bool | metaValueExists (const String &name) const |
Returns whether an entry with the given name exists. More... | |
bool | metaValueExists (UInt index) const |
Returns whether an entry with the given index exists. More... | |
void | setMetaValue (const String &name, const DataValue &value) |
Sets the DataValue corresponding to a name. More... | |
void | setMetaValue (UInt index, const DataValue &value) |
Sets the DataValue corresponding to an index. More... | |
void | removeMetaValue (const String &name) |
Removes the DataValue corresponding to name if it exists. More... | |
void | removeMetaValue (UInt index) |
Removes the DataValue corresponding to index if it exists. More... | |
void | getKeys (std::vector< String > &keys) const |
Fills the given vector with a list of all keys for which a value is set. More... | |
void | getKeys (std::vector< UInt > &keys) const |
Fills the given vector with a list of all keys for which a value is set. More... | |
bool | isMetaEmpty () const |
Returns if the MetaInfo is empty. More... | |
void | clearMetaInfo () |
Removes all meta values. More... | |
Public Attributes | |
Size | start_pos |
Size | end_pos |
String | left_neighbor |
String | right_neighbor |
Static Public Attributes | |
static constexpr Size | UNKNOWN_POSITION = Size(-1) |
static constexpr char | UNKNOWN_NEIGHBOR = 'X' |
static constexpr char | LEFT_TERMINUS = '[' |
static constexpr char | RIGHT_TERMINUS = ']' |
Additional Inherited Members | |
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static MetaInfoRegistry & | metaRegistry () |
Returns a reference to the MetaInfoRegistry. More... | |
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void | createIfNotExists_ () |
Creates the MetaInfo object if it does not exist. More... | |
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MetaInfo * | meta_ |
Pointer to the MetaInfo object (0 by default) More... | |
Meta data for the association between an identified molecule (e.g. peptide) and a parent molecule (e.g. protein).
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inlineexplicit |
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inline |
References MoleculeParentMatch::end_pos, and MoleculeParentMatch::start_pos.
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inline |
References MoleculeParentMatch::end_pos, and MoleculeParentMatch::start_pos.
Size end_pos |
String left_neighbor |
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staticconstexpr |
String right_neighbor |
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staticconstexpr |
Size start_pos |
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staticconstexpr |
Referenced by MoleculeParentMatch::hasValidPositions().