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OpenMS
2.5.0
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100 void endElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname)
override;
103 void startElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname,
const xercesc::Attributes& attributes)
override;
106 void characters(
const XMLCh*
const chars,
const XMLSize_t length)
override;
PeakFileOptions options_
Options that can be set.
Definition: ConsensusXMLFile.h:114
Base class for XML handlers.
Definition: XMLHandler.h:151
PeptideIdentification pep_id_
Temporary peptide ProteinIdentification.
Definition: ConsensusXMLFile.h:129
ProteinIdentification prot_id_
Temporary protein ProteinIdentification.
Definition: ConsensusXMLFile.h:127
A more convenient string class.
Definition: String.h:58
Representation of a protein hit.
Definition: ProteinHit.h:57
Map< String, String > identifier_id_
Map from identification run identifier to file xs:id (for linking peptide identifications to the corr...
Definition: ConsensusXMLFile.h:141
Representation of a protein identification run.
Definition: ProteinIdentification.h:71
Map< String, String > id_identifier_
Map from file xs:id to identification run identifier (for linking peptide identifications to the corr...
Definition: ConsensusXMLFile.h:143
Map< String, String > proteinid_to_accession_
Map from protein id to accession.
Definition: ConsensusXMLFile.h:137
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
Base class for all classes that want to report their progress.
Definition: ProgressLogger.h:54
ProteinHit prot_hit_
Temporary protein hit.
Definition: ConsensusXMLFile.h:131
DPosition< 2 > pos_
Definition: ConsensusXMLFile.h:120
A consensus feature spanning multiple LC-MS/MS experiments.
Definition: ConsensusFeature.h:69
UInt progress_
Definition: ConsensusXMLFile.h:147
PeptideHit pep_hit_
Temporary peptide hit.
Definition: ConsensusXMLFile.h:133
Map< String, Size > accession_to_id_
Map from search identifier concatenated with protein accession to id.
Definition: ConsensusXMLFile.h:139
A container for consensus elements.
Definition: ConsensusMap.h:79
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
ProteinIdentification::SearchParameters search_param_
Temporary search parameters file.
Definition: ConsensusXMLFile.h:145
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:62
MetaInfoInterface * last_meta_
Pointer to last read object as a MetaInfoInterface, or null.
Definition: ConsensusXMLFile.h:125
ConsensusMap * consensus_map_
Definition: ConsensusXMLFile.h:118
Options for loading files containing peak data.
Definition: PeakFileOptions.h:47
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:48
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:50
Search parameters of the DB search.
Definition: ProteinIdentification.h:221
double it_
Definition: ConsensusXMLFile.h:121
ConsensusFeature act_cons_element_
Definition: ConsensusXMLFile.h:119
std::vector< PeptideEvidence > peptide_evidences_
Temporary peptide evidences.
Definition: ConsensusXMLFile.h:135
This class provides Input functionality for ConsensusMaps and Output functionality for alignments and...
Definition: ConsensusXMLFile.h:61
Representation of a peptide hit.
Definition: PeptideHit.h:54