OpenMS  2.5.0
Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
XMLFile Class Reference

Base class for loading/storing XML files that have a handler derived from XMLHandler. More...

#include <OpenMS/FORMAT/XMLFile.h>

Inheritance diagram for XMLFile:
ConsensusXMLFile CVMappingFile FeatureXMLFile IdXMLFile SemanticValidator MascotXMLFile MzDataFile MzIdentMLFile MzMLFile MzQuantMLFile MzXMLFile OMSSAXMLFile ParamXMLFile PepXMLFile PepXMLFileMascot ProtXMLFile PTMXMLFile QcMLFile ToolDescriptionFile TraMLFile TransformationXMLFile UnimodXMLFile XQuestResultXMLFile XTandemInfile XTandemXMLFile

Public Member Functions

 XMLFile ()
 Default constructor. More...
 
 XMLFile (const String &schema_location, const String &version)
 Constructor that sets the schema location. More...
 
virtual ~XMLFile ()
 Destructor. More...
 
bool isValid (const String &filename, std::ostream &os)
 Checks if a file validates against the XML schema. More...
 
const StringgetVersion () const
 return the version of the schema More...
 

Protected Member Functions

void parse_ (const String &filename, XMLHandler *handler)
 Parses the XML file given by filename using the handler given by handler. More...
 
void parseBuffer_ (const std::string &buffer, XMLHandler *handler)
 Parses the in-memory buffer given by buffer using the handler given by handler. More...
 
void save_ (const String &filename, XMLHandler *handler) const
 Stores the contents of the XML handler given by handler in the file given by filename. More...
 
void enforceEncoding_ (const String &encoding)
 

Protected Attributes

String schema_location_
 XML schema file location. More...
 
String schema_version_
 Version string. More...
 
String enforced_encoding_
 Encoding string that replaces the encoding (system dependent or specified in the XML). Disabled if empty. Used as a workaround for XTandem output xml. More...
 

Detailed Description

Base class for loading/storing XML files that have a handler derived from XMLHandler.

Constructor & Destructor Documentation

◆ XMLFile() [1/2]

XMLFile ( )

Default constructor.

◆ XMLFile() [2/2]

XMLFile ( const String schema_location,
const String version 
)

Constructor that sets the schema location.

◆ ~XMLFile()

virtual ~XMLFile ( )
virtual

Destructor.

Member Function Documentation

◆ enforceEncoding_()

void enforceEncoding_ ( const String encoding)
protected

◆ getVersion()

const String& getVersion ( ) const

return the version of the schema

◆ isValid()

bool isValid ( const String filename,
std::ostream &  os 
)

Checks if a file validates against the XML schema.

Error messages are printed to the error stream, unless redirected with the attribute os .

Parameters
filenameThe name of the file to validate.
osThe ostream where error messages should be send.
Exceptions
Exception::FileNotFoundis thrown if the file cannot be found
Exception::NotImplementedis thrown if there is no schema available for the file type

◆ parse_()

void parse_ ( const String filename,
XMLHandler handler 
)
protected

Parses the XML file given by filename using the handler given by handler.

Exceptions
Exception::FileNotFoundis thrown if the file is not found
Exception::ParseErroris thrown if an error occurred during the parsing

◆ parseBuffer_()

void parseBuffer_ ( const std::string &  buffer,
XMLHandler handler 
)
protected

Parses the in-memory buffer given by buffer using the handler given by handler.

Note
Currently the buffer needs to be plain text, gzip buffer is not supported.
Exceptions
Exception::ParseErroris thrown if an error occurred during the parsing

◆ save_()

void save_ ( const String filename,
XMLHandler handler 
) const
protected

Stores the contents of the XML handler given by handler in the file given by filename.

Exceptions
Exception::UnableToCreateFileis thrown if the file cannot be created

Member Data Documentation

◆ enforced_encoding_

String enforced_encoding_
protected

Encoding string that replaces the encoding (system dependent or specified in the XML). Disabled if empty. Used as a workaround for XTandem output xml.

◆ schema_location_

String schema_location_
protected

XML schema file location.

◆ schema_version_

String schema_version_
protected

Version string.