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OpenMS
2.5.0
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69 void load(
const String & filename, std::map<
String, std::vector<AASequence> > & peptides);
74 void endElement(
const XMLCh *
const ,
const XMLCh *
const ,
const XMLCh *
const qname)
override;
77 void startElement(
const XMLCh *
const ,
const XMLCh *
const ,
const XMLCh *
const qname,
const xercesc::Attributes & attributes)
override;
79 void matchModification_(
double mass,
String & modification_description);
95 std::map<String, std::vector<AASequence> > *
peptides_;
std::vector< std::pair< String, double > > variable_modifications_
stores the variable residue modifications
Definition: PepXMLFileMascot.h:104
Base class for XML handlers.
Definition: XMLHandler.h:151
std::vector< AASequence > actual_aa_sequences_
stores the actual peptide sequences
Definition: PepXMLFileMascot.h:98
A more convenient string class.
Definition: String.h:58
Used to load Mascot PepXML files.
Definition: PepXMLFileMascot.h:54
String actual_title_
Pointer to fill in protein identifications.
Definition: PepXMLFileMascot.h:86
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
std::map< String, std::vector< AASequence > > * peptides_
The peptides together with the spectrum title.
Definition: PepXMLFileMascot.h:95
std::vector< std::pair< String, UInt > > actual_modifications_
The modifications of the actual peptide hit (position is 1-based)
Definition: PepXMLFileMascot.h:92
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:48
String actual_sequence_
The sequence of the actual peptide hit.
Definition: PepXMLFileMascot.h:89
std::vector< String > fixed_modifications_
stores the fixed residue modifications
Definition: PepXMLFileMascot.h:101