TargetedExperimentHelper.h File Reference

#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/StandardDeclarations.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/Macros.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/METADATA/CVTerm.h>
#include <OpenMS/METADATA/CVTermList.h>
#include <OpenMS/METADATA/CVTermListInterface.h>
#include <OpenMS/CHEMISTRY/Residue.h>
#include <boost/numeric/conversion/cast.hpp>

Go to the source code of this file.

Classes
struct	Configuration
struct	CV
struct	Protein
class	RetentionTime
	This class stores a retention time structure that is used in TargetedExperiment (representing a TraML file) More...
class	PeptideCompound
	Base class to represent either a peptide or a compound. More...
class	Compound
	Represents a compound (small molecule) More...
class	Peptide
	Represents a peptide (amino acid sequence) More...
struct	Peptide::Modification
struct	Contact
struct	Publication
struct	Instrument
struct	Prediction
struct	Interpretation
	Product ion interpretation. More...
struct	TraMLProduct
	Represents a product ion. More...

Namespaces
	OpenMS
	Main OpenMS namespace.
	OpenMS::TargetedExperimentHelper
	This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget).

Functions
OpenMS::AASequence	getAASequence (const Peptide &peptide)
	helper function that converts a Peptide object to a AASequence object More...
void	setModification (int location, int max_size, String modification, OpenMS::AASequence &aas)
	helper function that sets a modification on a AASequence object More...