OpenMS  2.5.0
Public Types | Public Member Functions | Public Attributes | List of all members
Interpretation Struct Reference

Product ion interpretation. More...

#include <OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h>

Inheritance diagram for Interpretation:
CVTermListInterface MetaInfoInterface

Public Types

typedef Residue::ResidueType IonType
 Interpretation IonType. More...
 

Public Member Functions

 Interpretation ()
 
Operators assignment, equality, inequality
bool operator== (const Interpretation &rhs) const
 
bool operator!= (const Interpretation &rhs) const
 
- Public Member Functions inherited from CVTermListInterface
 CVTermListInterface ()
 
 CVTermListInterface (const CVTermListInterface &rhs)
 Copy constructor. More...
 
 CVTermListInterface (CVTermListInterface &&) noexcept
 Move constructor. More...
 
 ~CVTermListInterface ()
 
CVTermListInterfaceoperator= (const CVTermListInterface &rhs)
 Assignment operator. More...
 
CVTermListInterfaceoperator= (CVTermListInterface &&) noexcept
 Move assignment operator. More...
 
bool operator== (const CVTermListInterface &rhs) const
 equality operator More...
 
bool operator!= (const CVTermListInterface &rhs) const
 inequality operator More...
 
void replaceCVTerms (Map< String, std::vector< CVTerm > > &cv_terms)
 
void setCVTerms (const std::vector< CVTerm > &terms)
 sets the CV terms More...
 
void replaceCVTerm (const CVTerm &cv_term)
 replaces the specified CV term More...
 
void replaceCVTerms (const std::vector< CVTerm > &cv_terms, const String &accession)
 replaces the specified CV terms using the given accession number More...
 
void replaceCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map)
 replaces all cv terms with a map (can be obtained via getCVTerms) More...
 
void consumeCVTerms (const Map< String, std::vector< CVTerm > > &cv_term_map)
 merges the given map into the member map, no duplicate checking More...
 
const Map< String, std::vector< CVTerm > > & getCVTerms () const
 returns the accession string of the term More...
 
void addCVTerm (const CVTerm &term)
 adds a CV term More...
 
bool hasCVTerm (const String &accession) const
 checks whether the term has a value More...
 
bool empty () const
 
- Public Member Functions inherited from MetaInfoInterface
 MetaInfoInterface ()
 Constructor. More...
 
 MetaInfoInterface (const MetaInfoInterface &rhs)
 Copy constructor. More...
 
 MetaInfoInterface (MetaInfoInterface &&) noexcept
 Move constructor. More...
 
 ~MetaInfoInterface ()
 Destructor. More...
 
MetaInfoInterfaceoperator= (const MetaInfoInterface &rhs)
 Assignment operator. More...
 
MetaInfoInterfaceoperator= (MetaInfoInterface &&) noexcept
 Move assignment operator. More...
 
bool operator== (const MetaInfoInterface &rhs) const
 Equality operator. More...
 
bool operator!= (const MetaInfoInterface &rhs) const
 Equality operator. More...
 
const DataValuegetMetaValue (const String &name, const DataValue &default_value=DataValue::EMPTY) const
 Returns the value corresponding to a string, or a default value (default: DataValue::EMPTY) if not found. More...
 
const DataValuegetMetaValue (UInt index, const DataValue &default_value=DataValue::EMPTY) const
 Returns the value corresponding to an index, or a default value (default: DataValue::EMPTY) if not found. More...
 
bool metaValueExists (const String &name) const
 Returns whether an entry with the given name exists. More...
 
bool metaValueExists (UInt index) const
 Returns whether an entry with the given index exists. More...
 
void setMetaValue (const String &name, const DataValue &value)
 Sets the DataValue corresponding to a name. More...
 
void setMetaValue (UInt index, const DataValue &value)
 Sets the DataValue corresponding to an index. More...
 
void removeMetaValue (const String &name)
 Removes the DataValue corresponding to name if it exists. More...
 
void removeMetaValue (UInt index)
 Removes the DataValue corresponding to index if it exists. More...
 
void getKeys (std::vector< String > &keys) const
 Fills the given vector with a list of all keys for which a value is set. More...
 
void getKeys (std::vector< UInt > &keys) const
 Fills the given vector with a list of all keys for which a value is set. More...
 
bool isMetaEmpty () const
 Returns if the MetaInfo is empty. More...
 
void clearMetaInfo ()
 Removes all meta values. More...
 

Public Attributes

unsigned char ordinal
 MS:1000903 : product ion series ordinal (e.g. 8 for a y8 ion) More...
 
unsigned char rank
 MS:1000926 : product interpretation rank (e.g. 1 for the most likely rank) More...
 
IonType iontype
 which type of ion (b/y/z/ ...), see Residue::ResidueType More...
 

Additional Inherited Members

- Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistrymetaRegistry ()
 Returns a reference to the MetaInfoRegistry. More...
 
- Protected Member Functions inherited from MetaInfoInterface
void createIfNotExists_ ()
 Creates the MetaInfo object if it does not exist. More...
 
- Protected Attributes inherited from MetaInfoInterface
MetaInfometa_
 Pointer to the MetaInfo object (0 by default) More...
 

Detailed Description

Product ion interpretation.

The interpretation of a MS product ion (mostly has functions for peptides at the moment). Can store information about the ion type,

Member Typedef Documentation

◆ IonType

Interpretation IonType.

Constructor & Destructor Documentation

◆ Interpretation()

Interpretation ( )
inline

Member Function Documentation

◆ operator!=()

bool operator!= ( const Interpretation rhs) const
inline

References KDTree::operator==().

◆ operator==()

bool operator== ( const Interpretation rhs) const
inline

Member Data Documentation

◆ iontype

IonType iontype

which type of ion (b/y/z/ ...), see Residue::ResidueType

Referenced by Interpretation::operator==().

◆ ordinal

unsigned char ordinal

MS:1000903 : product ion series ordinal (e.g. 8 for a y8 ion)

Referenced by Interpretation::operator==().

◆ rank

unsigned char rank

MS:1000926 : product interpretation rank (e.g. 1 for the most likely rank)

Referenced by Interpretation::operator==().