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OpenMS
2.5.0
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46 class ProteinIdentification;
86 void startElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname,
const xercesc::Attributes& attributes)
override;
89 void endElement(
const XMLCh*
const ,
const XMLCh*
const ,
const XMLCh*
const qname)
override;
92 void characters(
const XMLCh*
const chars,
const XMLSize_t )
override;
ModificationDefinitionsSet default_nterm_mods_
Definition: XTandemXMLFile.h:149
std::stack< GroupType > group_type_stack_
Definition: XTandemXMLFile.h:162
UInt current_start_
Definition: XTandemXMLFile.h:134
GroupType
Definition: XTandemXMLFile.h:152
Base class for XML handlers.
Definition: XMLHandler.h:151
ModificationDefinitionsSet mod_def_set_
Definition: XTandemXMLFile.h:146
Representation of a set of modification definitions.
Definition: ModificationDefinitionsSet.h:58
bool is_spectrum_note_
Definition: XTandemXMLFile.h:106
A more convenient string class.
Definition: String.h:58
bool is_protein_note_
Definition: XTandemXMLFile.h:103
String tag_
Definition: XTandemXMLFile.h:131
Representation of a protein identification run.
Definition: ProteinIdentification.h:71
std::map< UInt, String > spectrum_ids_
Definition: XTandemXMLFile.h:143
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
String current_protein_
Definition: XTandemXMLFile.h:122
std::map< UInt, std::vector< PeptideHit > > peptide_hits_
Definition: XTandemXMLFile.h:113
std::set< UInt > protein_uids_
Definition: XTandemXMLFile.h:119
Int current_charge_
Definition: XTandemXMLFile.h:125
UInt current_stop_
Definition: XTandemXMLFile.h:137
ProteinIdentification * protein_identification_
Definition: XTandemXMLFile.h:100
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
UInt current_id_
Definition: XTandemXMLFile.h:128
Base class for loading/storing XML files that have a handler derived from XMLHandler.
Definition: XMLFile.h:48
bool skip_protein_acc_update_
Definition: XTandemXMLFile.h:110
String previous_seq_
Definition: XTandemXMLFile.h:140
std::vector< ProteinHit > protein_hits_
Definition: XTandemXMLFile.h:116
Used to load XTandemXML files.
Definition: XTandemXMLFile.h:56