AbsoluteQuantitation Member List

This is the complete list of members for AbsoluteQuantitation, including all inherited members.

AbsoluteQuantitation()	AbsoluteQuantitation
applyCalibration(const Feature &component, const Feature &IS_component, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)	AbsoluteQuantitation
calculateBias(const double &actual_concentration, const double &calculated_concentration)	AbsoluteQuantitation
calculateBiasAndR(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, std::vector< double > &biases, double &correlation_coefficient)	AbsoluteQuantitation
calculateRatio(const Feature &component_1, const Feature &component_2, const String &feature_name)	AbsoluteQuantitation
check_defaults_	DefaultParamHandler	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
extractComponents_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const std::vector< size_t > &component_concentrations_indices)	AbsoluteQuantitation	protected
fitCalibration(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)	AbsoluteQuantitation
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getQuantMethods()	AbsoluteQuantitation
getQuantMethodsAsMap()	AbsoluteQuantitation
getSubsections() const	DefaultParamHandler
jackknifeOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)	AbsoluteQuantitation	protected
max_bias_	AbsoluteQuantitation	private
max_iters_	AbsoluteQuantitation	private
min_correlation_coefficient_	AbsoluteQuantitation	private
min_points_	AbsoluteQuantitation	private
operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
optimization_method_	AbsoluteQuantitation	private
optimizeCalibrationCurveIterative(std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params, Param &optimized_params)	AbsoluteQuantitation
optimizeCalibrationCurves(std::map< String, std::vector< AbsoluteQuantitationStandards::featureConcentration >> &components_concentrations)	AbsoluteQuantitation
optimizeSingleCalibrationCurve(const String &component_name, std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations)	AbsoluteQuantitation
outlier_detection_method_	AbsoluteQuantitation	private
param_	DefaultParamHandler	protected
quant_methods_	AbsoluteQuantitation	private
quantifyComponents(FeatureMap &unknowns)	AbsoluteQuantitation
residualOutlierCandidate_(const std::vector< AbsoluteQuantitationStandards::featureConcentration > &component_concentrations, const String &feature_name, const String &transformation_model, const Param &transformation_model_params)	AbsoluteQuantitation	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
setQuantMethods(std::vector< AbsoluteQuantitationMethod > &quant_methods)	AbsoluteQuantitation
subsections_	DefaultParamHandler	protected
updateMembers_()	AbsoluteQuantitation	privatevirtual
use_chauvenet_	AbsoluteQuantitation	private
warn_empty_defaults_	DefaultParamHandler	protected
~AbsoluteQuantitation()	AbsoluteQuantitation
~DefaultParamHandler()	DefaultParamHandler	virtual