OpenMS  2.5.0
BayesianProteinInferenceAlgorithm Member List

This is the complete list of members for BayesianProteinInferenceAlgorithm, including all inherited members.

BayesianProteinInferenceAlgorithm(unsigned int debug_lvl=0)BayesianProteinInferenceAlgorithmexplicit
check_defaults_DefaultParamHandlerprotected
checkConvertAndFilterPepHits_BayesianProteinInferenceAlgorithmprivate
CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
debug_lvl_BayesianProteinInferenceAlgorithmprivate
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
endProgress() constProgressLogger
error_name_DefaultParamHandlerprotected
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
GUI enum valueProgressLogger
inferPosteriorProbabilities(std::vector< ProteinIdentification > &proteinIDs, std::vector< PeptideIdentification > &peptideIDs, boost::optional< const ExperimentalDesign > exp_des=boost::optional< const ExperimentalDesign >())BayesianProteinInferenceAlgorithm
inferPosteriorProbabilities(ConsensusMap &cmap, boost::optional< const ExperimentalDesign > exp_des=boost::optional< const ExperimentalDesign >())BayesianProteinInferenceAlgorithm
inferPosteriorProbabilities_(Internal::IDBoostGraph &ibg)BayesianProteinInferenceAlgorithmprivate
initGridSearchFromParams_(std::vector< double > &alpha_search, std::vector< double > &beta_search, std::vector< double > &gamma_search)BayesianProteinInferenceAlgorithmprivate
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
nextProgress() constProgressLogger
NONE enum valueProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
setScoreTypeAndSettings_(ProteinIdentification &proteinIDs)BayesianProteinInferenceAlgorithmprivate
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
type_ProgressLoggermutableprotected
updateMembers_() overrideBayesianProteinInferenceAlgorithmvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~BayesianProteinInferenceAlgorithm() override=defaultBayesianProteinInferenceAlgorithm
~DefaultParamHandler()DefaultParamHandlervirtual
~ProgressLogger()ProgressLogger
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