OpenMS  2.5.0
ConsensusIDAlgorithmPEPMatrix Member List

This is the complete list of members for ConsensusIDAlgorithmPEPMatrix, including all inherited members.

alignment_ConsensusIDAlgorithmPEPMatrixprivate
apply(std::vector< PeptideIdentification > &ids, Size number_of_runs=0)ConsensusIDAlgorithm
apply_(std::vector< PeptideIdentification > &ids, SequenceGrouping &results) overrideConsensusIDAlgorithmSimilarityprivatevirtual
check_defaults_DefaultParamHandlerprotected
compareChargeStates_(Int &recorded_charge, Int new_charge, const AASequence &peptide)ConsensusIDAlgorithmprotected
ConsensusIDAlgorithm()ConsensusIDAlgorithmprotected
ConsensusIDAlgorithm(const ConsensusIDAlgorithm &)ConsensusIDAlgorithmprivate
ConsensusIDAlgorithmPEPMatrix()ConsensusIDAlgorithmPEPMatrix
ConsensusIDAlgorithmPEPMatrix(const ConsensusIDAlgorithmPEPMatrix &)ConsensusIDAlgorithmPEPMatrixprivate
ConsensusIDAlgorithmSimilarity()ConsensusIDAlgorithmSimilarityprotected
ConsensusIDAlgorithmSimilarity(const ConsensusIDAlgorithmSimilarity &)ConsensusIDAlgorithmSimilarityprivate
considered_hits_ConsensusIDAlgorithmprotected
count_empty_ConsensusIDAlgorithmprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSimilarity_(AASequence seq1, AASequence seq2) overrideConsensusIDAlgorithmPEPMatrixprivatevirtual
getSubsections() constDefaultParamHandler
min_support_ConsensusIDAlgorithmprotected
number_of_runs_ConsensusIDAlgorithmprotected
operator=(const ConsensusIDAlgorithmPEPMatrix &)ConsensusIDAlgorithmPEPMatrixprivate
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
scoring_method_ConsensusIDAlgorithmPEPMatrixprivate
SeqAnScore typedefConsensusIDAlgorithmPEPMatrixprivate
SeqAnSequence typedefConsensusIDAlgorithmPEPMatrixprivate
SequenceGrouping typedefConsensusIDAlgorithmprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
similarities_ConsensusIDAlgorithmSimilarityprotected
SimilarityCache typedefConsensusIDAlgorithmSimilarityprotected
subsections_DefaultParamHandlerprotected
updateMembers_() overrideConsensusIDAlgorithmPEPMatrixprivatevirtual
warn_empty_defaults_DefaultParamHandlerprotected
~ConsensusIDAlgorithm() overrideConsensusIDAlgorithm
~DefaultParamHandler()DefaultParamHandlervirtual
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