centroided_ | FeatureFinderMultiplexAlgorithm | protected |
charge_max_ | FeatureFinderMultiplexAlgorithm | protected |
charge_min_ | FeatureFinderMultiplexAlgorithm | protected |
check_defaults_ | DefaultParamHandler | protected |
CMD enum value | ProgressLogger | |
consensus_map_ | FeatureFinderMultiplexAlgorithm | protected |
correctPeptideIntensities_(const MultiplexIsotopicPeakPattern &pattern, std::map< size_t, SplinePackage > &spline_chromatograms, const std::vector< double > &rt_peptide, std::vector< double > &intensity_peptide) | FeatureFinderMultiplexAlgorithm | protected |
current_logger_ | ProgressLogger | mutableprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
determinePeptideIntensitiesCentroided_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteCentroided > &satellites) | FeatureFinderMultiplexAlgorithm | protected |
determinePeptideIntensitiesProfile_(const MultiplexIsotopicPeakPattern &pattern, const std::multimap< size_t, MultiplexSatelliteProfile > &satellites) | FeatureFinderMultiplexAlgorithm | protected |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | protected |
exp_blacklist_ | FeatureFinderMultiplexAlgorithm | protected |
exp_centroid_ | FeatureFinderMultiplexAlgorithm | protected |
exp_profile_ | FeatureFinderMultiplexAlgorithm | protected |
feature_map_ | FeatureFinderMultiplexAlgorithm | protected |
FeatureFinderMultiplexAlgorithm() | FeatureFinderMultiplexAlgorithm | |
generateMapsCentroided_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, std::vector< std::map< int, GridBasedCluster > > &cluster_results) | FeatureFinderMultiplexAlgorithm | protected |
generateMapsProfile_(const std::vector< MultiplexIsotopicPeakPattern > &patterns, const std::vector< MultiplexFilteredMSExperiment > &filter_results, const std::vector< std::map< int, GridBasedCluster > > &cluster_results) | FeatureFinderMultiplexAlgorithm | protected |
generatePeakPatterns_(int charge_min, int charge_max, int peaks_per_peptide_max, const std::vector< MultiplexDeltaMasses > &mass_pattern_list) | FeatureFinderMultiplexAlgorithm | protected |
getBlacklist() | FeatureFinderMultiplexAlgorithm | |
getConsensusMap() | FeatureFinderMultiplexAlgorithm | |
getDefaults() const | DefaultParamHandler | |
getFeatureMap() | FeatureFinderMultiplexAlgorithm | |
getLogType() const | ProgressLogger | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
isotopes_per_peptide_max_ | FeatureFinderMultiplexAlgorithm | protected |
isotopes_per_peptide_min_ | FeatureFinderMultiplexAlgorithm | protected |
label_mass_shift_ | FeatureFinderMultiplexAlgorithm | protected |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
prog_log_ | FeatureFinderMultiplexAlgorithm | protected |
progress_ | FeatureFinderMultiplexAlgorithm | protected |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
run(MSExperiment &exp, bool progress) | FeatureFinderMultiplexAlgorithm | |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | protected |
type_ | ProgressLogger | mutableprotected |
updateMembers_() | DefaultParamHandler | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~ProgressLogger() | ProgressLogger | |