addConsensusFeature_(const std::vector< Size > &indices, const KDTreeFeatureMaps &kd_data, ConsensusMap &out) const | FeatureGroupingAlgorithmKD | private |
check_defaults_ | DefaultParamHandler | protected |
CMD enum value | ProgressLogger | |
computeBestClusterForCenter_(Size i, std::vector< Size > &cf_indices, const std::vector< Int > &assigned, const KDTreeFeatureMaps &kd_data) const | FeatureGroupingAlgorithmKD | private |
create() | FeatureGroupingAlgorithmKD | inlinestatic |
current_logger_ | ProgressLogger | mutableprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | protected |
feature_distance_ | FeatureGroupingAlgorithmKD | private |
FeatureGroupingAlgorithm() | FeatureGroupingAlgorithm | |
FeatureGroupingAlgorithm(const FeatureGroupingAlgorithm &) | FeatureGroupingAlgorithm | private |
FeatureGroupingAlgorithmKD() | FeatureGroupingAlgorithmKD | |
FeatureGroupingAlgorithmKD(const FeatureGroupingAlgorithmKD &) | FeatureGroupingAlgorithmKD | private |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getProductName() | FeatureGroupingAlgorithmKD | inlinestatic |
getSubsections() const | DefaultParamHandler | |
group(const std::vector< FeatureMap > &maps, ConsensusMap &out) override | FeatureGroupingAlgorithmKD | virtual |
group(const std::vector< ConsensusMap > &maps, ConsensusMap &out) override | FeatureGroupingAlgorithmKD | virtual |
group_(const std::vector< MapType > &input_maps, ConsensusMap &out) | FeatureGroupingAlgorithmKD | private |
GUI enum value | ProgressLogger | |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
mz_ppm_ | FeatureGroupingAlgorithmKD | private |
mz_tol_ | FeatureGroupingAlgorithmKD | private |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
operator=(const FeatureGroupingAlgorithmKD &) | FeatureGroupingAlgorithmKD | private |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
postprocess_(const std::vector< MapType > &maps, ConsensusMap &out) | FeatureGroupingAlgorithm | inlineprotected |
progress_ | FeatureGroupingAlgorithmKD | private |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
recursion_depth_ | ProgressLogger | protectedstatic |
registerChildren() | FeatureGroupingAlgorithm | static |
rt_tol_secs_ | FeatureGroupingAlgorithmKD | private |
runClustering_(const KDTreeFeatureMaps &kd_data, ConsensusMap &out) | FeatureGroupingAlgorithmKD | private |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | protected |
transferSubelements(const std::vector< ConsensusMap > &maps, ConsensusMap &out) const | FeatureGroupingAlgorithm | |
type_ | ProgressLogger | mutableprotected |
updateClusterProxies_(std::set< ClusterProxyKD > &potential_clusters, std::vector< ClusterProxyKD > &cluster_for_idx, const std::set< Size > &update_these, const std::vector< Int > &assigned, const KDTreeFeatureMaps &kd_data) | FeatureGroupingAlgorithmKD | private |
updateMembers_() | DefaultParamHandler | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~FeatureGroupingAlgorithm() override | FeatureGroupingAlgorithm | |
~FeatureGroupingAlgorithmKD() override | FeatureGroupingAlgorithmKD | |
~ProgressLogger() | ProgressLogger | |