accessionEqual_(const ProteinHit &p1, const ProteinHit &p2) | IDMergerAlgorithm | inlineprivatestatic |
accessionHash_(const ProteinHit &p) | IDMergerAlgorithm | inlineprivatestatic |
check_defaults_ | DefaultParamHandler | protected |
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const String &experiment_type) const | IDMergerAlgorithm | private |
checkOldRunConsistency_(const std::vector< ProteinIdentification > &protRuns, const ProteinIdentification &ref, const String &experiment_type) const | IDMergerAlgorithm | private |
CMD enum value | ProgressLogger | |
collected_protein_hits_ | IDMergerAlgorithm | private |
copySearchParams_(const ProteinIdentification &from, ProteinIdentification &to) | IDMergerAlgorithm | privatestatic |
current_logger_ | ProgressLogger | mutableprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
endProgress() const | ProgressLogger | |
equal_type typedef | IDMergerAlgorithm | private |
error_name_ | DefaultParamHandler | protected |
file_origin_to_idx_ | IDMergerAlgorithm | private |
filled_ | IDMergerAlgorithm | private |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getName() const | DefaultParamHandler | |
getNewIdentifier_() const | IDMergerAlgorithm | private |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
hash_type typedef | IDMergerAlgorithm | private |
id_ | IDMergerAlgorithm | private |
IDMergerAlgorithm(const String &runIdentifier="merged") | IDMergerAlgorithm | explicit |
insertProteinIDs_(std::vector< ProteinIdentification > &&old_protRuns) | IDMergerAlgorithm | private |
insertRuns(std::vector< ProteinIdentification > &&prots, std::vector< PeptideIdentification > &&peps) | IDMergerAlgorithm | |
insertRuns(const std::vector< ProteinIdentification > &prots, const std::vector< PeptideIdentification > &peps) | IDMergerAlgorithm | |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
movePepIDsAndRefProteinsToResultFaster_(std::vector< PeptideIdentification > &&pepIDs, std::vector< ProteinIdentification > &&old_protRuns) | IDMergerAlgorithm | private |
nextProgress() const | ProgressLogger | |
NONE enum value | ProgressLogger | |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
pep_result_ | IDMergerAlgorithm | private |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
prot_result_ | IDMergerAlgorithm | private |
recursion_depth_ | ProgressLogger | protectedstatic |
returnResultsAndClear(ProteinIdentification &prots, std::vector< PeptideIdentification > &peps) | IDMergerAlgorithm | |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | protected |
type_ | ProgressLogger | mutableprotected |
updateAndMovePepIDs_(std::vector< PeptideIdentification > &&pepIDs, const std::map< String, Size > &runID_to_runIdx, const std::vector< StringList > &originFiles, bool annotate_origin) | IDMergerAlgorithm | private |
updateMembers_() | DefaultParamHandler | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~ProgressLogger() | ProgressLogger | |