MzQuantMLHandler Member List

This is the complete list of members for MzQuantMLHandler, including all inherited members.

ActionMode enum name	XMLHandler
asBool_(const String &in)	XMLHandler	inlineprotected
asDateTime_(String date_string)	XMLHandler	inlineprotected
asDouble_(const String &in)	XMLHandler	inlineprotected
asFloat_(const String &in)	XMLHandler	inlineprotected
asInt_(const String &in)	XMLHandler	inlineprotected
asInt_(const XMLCh *in)	XMLHandler	inlineprotected
asUInt_(const String &in)	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
cf_cf_obj_	MzQuantMLHandler	private
characters(const XMLCh *const chars, const XMLSize_t length) override	MzQuantMLHandler
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids)	XMLHandler
cm_cf_ids_	MzQuantMLHandler	private
cmsq_	MzQuantMLHandler	protected
current_assay_	MzQuantMLHandler	private
current_cf_id_	MzQuantMLHandler	private
current_col_types_	MzQuantMLHandler	private
current_count_	MzQuantMLHandler	private
current_dm_values_	MzQuantMLHandler	private
current_dp_	MzQuantMLHandler	private
current_files_	MzQuantMLHandler	private
current_id_	MzQuantMLHandler	private
current_orderedps_	MzQuantMLHandler	private
current_pas_	MzQuantMLHandler	private
current_row_	MzQuantMLHandler	private
current_sws_	MzQuantMLHandler	private
cv_	MzQuantMLHandler	protected
cv_terms_	XMLHandler	protected
cvp_stack_	MzQuantMLHandler	private
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)	XMLHandler	inlineprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override	MzQuantMLHandler
equal_(const XMLCh *a, const XMLCh *b) const	XMLHandler	inlineprotected
error(const xercesc::SAXParseException &exception) override	XMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler
error_message_	XMLHandler	mutableprotected
errorString()	XMLHandler
expectList_(const String &str) const	XMLHandler	inlineprivate
f_cf_ids_	MzQuantMLHandler	private
f_f_obj_	MzQuantMLHandler	private
fatalError(const xercesc::SAXParseException &exception) override	XMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler
file_	XMLHandler	protected
getChildWithName_(const String &parent_accession, const String &name) const	MzQuantMLHandler	protected
getLoadDetail() const	XMLHandler	virtual
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const xercesc::Attributes &attributes, const String &cv_ref, const String &unit_accession="")	MzQuantMLHandler	protected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value)	MzQuantMLHandler	protected
LD_ALLDATA enum value	XMLHandler
LD_COUNTS_WITHOPTIONS enum value	XMLHandler
LD_RAWCOUNTS enum value	XMLHandler
LOAD enum value	XMLHandler
load_detail_	XMLHandler	protected
LOADDETAIL enum name	XMLHandler
logger_	MzQuantMLHandler	protected
msq_	MzQuantMLHandler	protected
MzQuantMLHandler(const MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger)	MzQuantMLHandler
MzQuantMLHandler(MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger)	MzQuantMLHandler
MzQuantMLHandler()	MzQuantMLHandler	private
MzQuantMLHandler(const MzQuantMLHandler &rhs)	MzQuantMLHandler	private
numden_r_ids_	MzQuantMLHandler	private
open_tags_	XMLHandler	protected
operator=(const MzQuantMLHandler &rhs)	MzQuantMLHandler	private
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
r_r_obj_	MzQuantMLHandler	private
r_rtemp_	MzQuantMLHandler	private
reset()	XMLHandler
setLoadDetail(const LOADDETAIL d)	XMLHandler	virtual
sm_	XMLHandler	protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override	MzQuantMLHandler
STORE enum value	XMLHandler
tag_	MzQuantMLHandler	protected
up_stack_	MzQuantMLHandler	private
version_	XMLHandler	protected
warning(const xercesc::SAXParseException &exception) override	XMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler
writeCVParams_(String &s, const Map< String, std::vector< CVTerm > > &, UInt indent)	MzQuantMLHandler	protected
writeFeature_(String &feature_xml, const std::vector< FeatureMap > &fm, UInt indentation_level)	MzQuantMLHandler	protected
writeTo(std::ostream &os) override	MzQuantMLHandler	virtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const	XMLHandler	protected
writeUserParams_(std::ostream &os, const MetaInfoInterface &meta, UInt indent)	MzQuantMLHandler	protected
writeUserParams_(String &s, const MetaInfoInterface &meta, UInt indent)	MzQuantMLHandler	protected
writeXMLEscape(const String &to_escape)	XMLHandler	inlinestatic
XMLHandler(const String &filename, const String &version)	XMLHandler
XMLHandler()	XMLHandler	private
~MzQuantMLHandler() override	MzQuantMLHandler
~XMLHandler() override	XMLHandler