OpenMS
2.5.0
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This is the complete list of members for PosteriorErrorProbabilityModel, including all inherited members.
check_defaults_ | DefaultParamHandler | protected |
computeLLAndIncorrectPosteriorsFromLogDensities(const std::vector< double > &incorrect_log_density, const std::vector< double > &correct_log_density, std::vector< double > &incorrect_posterior) | PosteriorErrorProbabilityModel | |
computeLogLikelihood(const std::vector< double > &incorrect_density, const std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
computeProbability(double score) const | PosteriorErrorProbabilityModel | |
correctly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
error_name_ | DefaultParamHandler | protected |
extractAndTransformScores(const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids, const bool split_charge, const bool top_hits_only, const bool target_decoy_available, const double fdr_for_targets_smaller) | PosteriorErrorProbabilityModel | static |
fillDensities(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
fillLogDensities(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
fillLogDensitiesGumbel(const std::vector< double > &x_scores, std::vector< double > &incorrect_density, std::vector< double > &correct_density) | PosteriorErrorProbabilityModel | |
fit(std::vector< double > &search_engine_scores, const String &outlier_handling) | PosteriorErrorProbabilityModel | |
fit(std::vector< double > &search_engine_scores, std::vector< double > &probabilities, const String &outlier_handling) | PosteriorErrorProbabilityModel | |
fitGumbelGauss(std::vector< double > &search_engine_scores, const String &outlier_handling) | PosteriorErrorProbabilityModel | |
getBothGnuplotFormula(const GaussFitter::GaussFitResult &incorrect, const GaussFitter::GaussFitResult &correct) const | PosteriorErrorProbabilityModel | |
getCorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline |
getDefaults() const | DefaultParamHandler | |
getGaussGnuplotFormula(const GaussFitter::GaussFitResult ¶ms) const | PosteriorErrorProbabilityModel | |
getGumbel_(double x, const GaussFitter::GaussFitResult ¶ms) | PosteriorErrorProbabilityModel | inlinestatic |
getGumbelGnuplotFormula(const GaussFitter::GaussFitResult ¶ms) const | PosteriorErrorProbabilityModel | |
getIncorrectlyAssignedFitResult() const | PosteriorErrorProbabilityModel | inline |
getIncorrectlyAssignedGumbelFitResult() const | PosteriorErrorProbabilityModel | inline |
getName() const | DefaultParamHandler | |
getNegativeGnuplotFormula_ | PosteriorErrorProbabilityModel | private |
getNegativePrior() const | PosteriorErrorProbabilityModel | inline |
getParameters() const | DefaultParamHandler | |
getPositiveGnuplotFormula_ | PosteriorErrorProbabilityModel | private |
getSmallestScore() | PosteriorErrorProbabilityModel | inline |
getSubsections() const | DefaultParamHandler | |
incorrectly_assigned_fit_gumbel_param_ | PosteriorErrorProbabilityModel | private |
incorrectly_assigned_fit_param_ | PosteriorErrorProbabilityModel | private |
initPlots(std::vector< double > &x_scores) | PosteriorErrorProbabilityModel | |
max_correctly_ | PosteriorErrorProbabilityModel | private |
max_incorrectly_ | PosteriorErrorProbabilityModel | private |
negative_prior_ | PosteriorErrorProbabilityModel | private |
operator=(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
plotTargetDecoyEstimation(std::vector< double > &target, std::vector< double > &decoy) | PosteriorErrorProbabilityModel | |
pos_neg_mean_weighted_posteriors(const std::vector< double > &x_scores, const std::vector< double > &incorrect_posteriors) | PosteriorErrorProbabilityModel | |
pos_neg_sigma_weighted_posteriors(const std::vector< double > &x_scores, const std::vector< double > &incorrect_posteriors, const std::pair< double, double > &means) | PosteriorErrorProbabilityModel | |
PosteriorErrorProbabilityModel() | PosteriorErrorProbabilityModel | |
PosteriorErrorProbabilityModel(const PosteriorErrorProbabilityModel &rhs) | PosteriorErrorProbabilityModel | private |
processOutliers_(std::vector< double > &x_scores, const String &outlier_handling) const | PosteriorErrorProbabilityModel | private |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
smallest_score_ | PosteriorErrorProbabilityModel | private |
subsections_ | DefaultParamHandler | protected |
transformScore_(const String &engine, const PeptideHit &hit) | PosteriorErrorProbabilityModel | privatestatic |
tryGnuplot(const String &gp_file) | PosteriorErrorProbabilityModel | |
updateMembers_() | DefaultParamHandler | protectedvirtual |
updateScores(const PosteriorErrorProbabilityModel &PEP_model, const String &search_engine, const Int charge, const bool prob_correct, const bool split_charge, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids, bool &unable_to_fit_data, bool &data_might_not_be_well_fit) | PosteriorErrorProbabilityModel | static |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~PosteriorErrorProbabilityModel() override | PosteriorErrorProbabilityModel |