OpenMS  2.5.0
MultiplexFiltering Member List

This is the complete list of members for MultiplexFiltering, including all inherited members.

averagine_similarity_MultiplexFilteringprotected
averagine_similarity_scaling_MultiplexFilteringprotected
averagine_type_MultiplexFilteringprotected
blacklist_MultiplexFilteringprotected
blacklistPeak_(const MultiplexFilteredPeak &peak)MultiplexFilteringprotected
blacklistPeak_(const MultiplexFilteredPeak &peak, unsigned pattern_idx)MultiplexFilteringprotected
checkForSignificantPeak_(double mz, double mz_tolerance, MSExperiment::ConstIterator &it_rt, double intensity_first_peak) constMultiplexFilteringprotected
CMD enum valueProgressLogger
current_logger_ProgressLoggermutableprotected
endProgress() constProgressLogger
exp_centroided_MultiplexFilteringprotected
exp_centroided_mapping_MultiplexFilteringprotected
exp_centroided_white_MultiplexFilteringprotected
filterAveragineModel_(const MultiplexIsotopicPeakPattern &pattern, const MultiplexFilteredPeak &peak) constMultiplexFilteringprotected
filterPeakPositions_(const MSSpectrum::ConstIterator &it_mz, const MSExperiment::ConstIterator &it_rt_begin, const MSExperiment::ConstIterator &it_rt_band_begin, const MSExperiment::ConstIterator &it_rt_band_end, const MultiplexIsotopicPeakPattern &pattern, MultiplexFilteredPeak &peak) constMultiplexFilteringprotected
filterPeptideCorrelation_(const MultiplexIsotopicPeakPattern &pattern, const MultiplexFilteredPeak &peak) constMultiplexFilteringprotected
getBlacklist()MultiplexFiltering
getCentroidedExperiment()MultiplexFiltering
getLogType() constProgressLogger
GUI enum valueProgressLogger
intensity_cutoff_MultiplexFilteringprotected
isotopes_per_peptide_max_MultiplexFilteringprotected
isotopes_per_peptide_min_MultiplexFilteringprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
MultiplexFiltering(const MSExperiment &exp_centroided, const std::vector< MultiplexIsotopicPeakPattern > &patterns, int isotopes_per_peptide_min, int isotopes_per_peptide_max, double intensity_cutoff, double rt_band, double mz_tolerance, bool mz_tolerance_unit, double peptide_similarity, double averagine_similarity, double averagine_similarity_scaling, String averagine_type="peptide")MultiplexFiltering
mz_tolerance_MultiplexFilteringprotected
mz_tolerance_unit_in_ppm_MultiplexFilteringprotected
nextProgress() constProgressLogger
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
patterns_MultiplexFilteringprotected
peptide_similarity_MultiplexFilteringprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
rt_band_MultiplexFilteringprotected
setLogType(LogType type) constProgressLogger
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
type_ProgressLoggermutableprotected
updateWhiteMSExperiment_()MultiplexFilteringprotected
White2Original typedefMultiplexFiltering
~ProgressLogger()ProgressLogger
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