OpenMS  2.5.0
MzTab Member List

This is the complete list of members for MzTab, including all inherited members.

addMetaInfoToOptionalColumns(const std::set< String > &keys, std::vector< MzTabOptionalColumnEntry > &opt, const String &id, const MetaInfoInterface &meta)MzTabstatic
addPepEvidenceToRows(const std::vector< PeptideEvidence > &peptide_evidences, MzTabPSMSectionRow &row, MzTabPSMSectionRows &rows)MzTabstatic
checkSequenceUniqueness_(const std::vector< PeptideIdentification > &curr_pep_ids)MzTabprotectedstatic
comment_rows_MzTabprotected
empty_rows_MzTabprotected
exportConsensusMapToMzTab(const ConsensusMap &consensus_map, const String &filename, const bool first_run_inference_only, const bool export_unidentified_features, const bool export_unassigned_ids, const bool export_subfeatures, const bool export_empty_pep_ids=false, const String &title="ConsensusMap export from OpenMS")MzTabstatic
exportFeatureMapToMzTab(const FeatureMap &feature_map, const String &filename)MzTabstatic
exportIdentificationsToMzTab(const std::vector< ProteinIdentification > &prot_ids, const std::vector< PeptideIdentification > &peptide_ids, const String &filename, bool first_run_inference_only, std::map< std::pair< size_t, size_t >, size_t > &map_run_fileidx_2_msfileidx, std::map< String, size_t > &idrun_2_run_index, bool export_empty_pep_ids=false)MzTabstatic
extractModificationListFromAASequence(const AASequence &aas, const std::vector< String > &fixed_mods=std::vector< String >())MzTabstatic
generateMzTabStringFromFixedModifications(const std::vector< String > &mods)MzTabstatic
generateMzTabStringFromModifications(const std::vector< String > &mods)MzTabstatic
generateMzTabStringFromVariableModifications(const std::vector< String > &mods)MzTabstatic
getCommentRows() constMzTab
getEmptyRows() constMzTab
getMetaData() constMzTab
getNucleicAcidOptionalColumnNames() constMzTab
getNucleicAcidSectionRows() constMzTab
getOligonucleotideOptionalColumnNames() constMzTab
getOligonucleotideSectionRows() constMzTab
getOptionalColumnNames_(const SectionRows &rows) constMzTabinlineprotected
getOSMOptionalColumnNames() constMzTab
getOSMSectionRows() constMzTab
getPeptideOptionalColumnNames() constMzTab
getPeptideSectionRows() constMzTab
getProteinOptionalColumnNames() constMzTab
getProteinSectionRows() constMzTab
getPSMOptionalColumnNames() constMzTab
getPSMSectionRows() constMzTab
getSmallMoleculeOptionalColumnNames() constMzTab
getSmallMoleculeSectionRows() constMzTab
meta_data_MzTabprotected
MzTab()MzTab
nucleic_acid_data_MzTabprotected
oligonucleotide_data_MzTabprotected
osm_data_MzTabprotected
peptide_data_MzTabprotected
protein_data_MzTabprotected
psm_data_MzTabprotected
setCommentRows(const std::map< Size, String > &com)MzTab
setEmptyRows(const std::vector< Size > &empty)MzTab
setMetaData(const MzTabMetaData &md)MzTab
setNucleicAcidSectionRows(const MzTabNucleicAcidSectionRows &nasd)MzTab
setOligonucleotideSectionRows(const MzTabOligonucleotideSectionRows &onsd)MzTab
setOSMSectionRows(const MzTabOSMSectionRows &osd)MzTab
setPeptideSectionRows(const MzTabPeptideSectionRows &psd)MzTab
setProteinSectionRows(const MzTabProteinSectionRows &psd)MzTab
setPSMSectionRows(const MzTabPSMSectionRows &psd)MzTab
setSmallMoleculeSectionRows(const MzTabSmallMoleculeSectionRows &smsd)MzTab
small_molecule_data_MzTabprotected
~MzTab()MzTabvirtual