OpenMS  2.5.0
NucleicAcidSpectrumGenerator Member List

This is the complete list of members for NucleicAcidSpectrumGenerator, including all inherited members.

a_intensity_NucleicAcidSpectrumGeneratorprotected
aB_intensity_NucleicAcidSpectrumGeneratorprotected
add_a_ions_NucleicAcidSpectrumGeneratorprotected
add_aB_ions_NucleicAcidSpectrumGeneratorprotected
add_all_precursor_charges_NucleicAcidSpectrumGeneratorprotected
add_b_ions_NucleicAcidSpectrumGeneratorprotected
add_c_ions_NucleicAcidSpectrumGeneratorprotected
add_d_ions_NucleicAcidSpectrumGeneratorprotected
add_first_prefix_ion_NucleicAcidSpectrumGeneratorprotected
add_metainfo_NucleicAcidSpectrumGeneratorprotected
add_precursor_peaks_NucleicAcidSpectrumGeneratorprotected
add_w_ions_NucleicAcidSpectrumGeneratorprotected
add_x_ions_NucleicAcidSpectrumGeneratorprotected
add_y_ions_NucleicAcidSpectrumGeneratorprotected
add_z_ions_NucleicAcidSpectrumGeneratorprotected
addAMinusBPeaks_(MSSpectrum &spectrum, const std::vector< double > &fragment_masses, const NASequence &oligo, Size start=0) constNucleicAcidSpectrumGeneratorprotected
addChargedSpectrum_(MSSpectrum &spectrum, const MSSpectrum &uncharged_spectrum, Int charge, bool add_precursor) constNucleicAcidSpectrumGeneratorprotected
addFragmentPeaks_(MSSpectrum &spectrum, const std::vector< double > &fragment_masses, const String &ion_type, double offset, double intensity, Size start=0) constNucleicAcidSpectrumGeneratorprotected
b_intensity_NucleicAcidSpectrumGeneratorprotected
c_intensity_NucleicAcidSpectrumGeneratorprotected
check_defaults_DefaultParamHandlerprotected
d_intensity_NucleicAcidSpectrumGeneratorprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getDefaults() constDefaultParamHandler
getMultipleSpectra(std::map< Int, MSSpectrum > &spectra, const NASequence &oligo, const std::set< Int > &charges, Int base_charge=1) constNucleicAcidSpectrumGenerator
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSpectrum(MSSpectrum &spectrum, const NASequence &oligo, Int min_charge, Int max_charge) constNucleicAcidSpectrumGenerator
getSubsections() constDefaultParamHandler
getUnchargedSpectrum_(const NASequence &oligo) constNucleicAcidSpectrumGeneratorprotected
NucleicAcidSpectrumGenerator()NucleicAcidSpectrumGenerator
NucleicAcidSpectrumGenerator(const NucleicAcidSpectrumGenerator &source)NucleicAcidSpectrumGenerator
operator=(const NucleicAcidSpectrumGenerator &source)NucleicAcidSpectrumGenerator
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
precursor_intensity_NucleicAcidSpectrumGeneratorprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
updateMembers_() overrideNucleicAcidSpectrumGeneratorvirtual
w_intensity_NucleicAcidSpectrumGeneratorprotected
warn_empty_defaults_DefaultParamHandlerprotected
x_intensity_NucleicAcidSpectrumGeneratorprotected
y_intensity_NucleicAcidSpectrumGeneratorprotected
z_intensity_NucleicAcidSpectrumGeneratorprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~NucleicAcidSpectrumGenerator() overrideNucleicAcidSpectrumGenerator