OpenMS
2.5.0
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This is the complete list of members for PeakPickerCWT, including all inherited members.
addPeak_(std::vector< PeakShape > &peaks_DC, PeakArea_ &area, double left_width, double right_width, OptimizePeakDeconvolution::Data &data) const | PeakPickerCWT | protected |
check_defaults_ | DefaultParamHandler | protected |
CMD enum value | ProgressLogger | |
ConstPeakIterator typedef | PeakPickerCWT | |
correlate_(const PeakShape &peak, const PeakArea_ &area, Int direction=0) const | PeakPickerCWT | protected |
current_logger_ | ProgressLogger | mutableprotected |
deconvolutePeak_(PeakShape &shape, std::vector< PeakShape > &peak_shapes, double peak_bound_cwt) const | PeakPickerCWT | protected |
deconvolution_ | PeakPickerCWT | protected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
determineChargeState_(std::vector< double > &peak_values) const | PeakPickerCWT | protected |
endProgress() const | ProgressLogger | |
error_name_ | DefaultParamHandler | protected |
estimatePeakWidth(const PeakMap &input) | PeakPickerCWT | |
fitPeakShape_(const PeakArea_ &area) const | PeakPickerCWT | protected |
fwhm_bound_ | PeakPickerCWT | protected |
getDefaults() const | DefaultParamHandler | |
getLogType() const | ProgressLogger | |
getMaxPosition_(const PeakIterator first, const PeakIterator last, const ContinuousWaveletTransform &wt, PeakArea_ &area, const Int distance_from_scan_border, const double peak_bound_cwt, const double peak_bound_ms2_level_cwt, const Int direction=1) const | PeakPickerCWT | protected |
getName() const | DefaultParamHandler | |
getNumberOfPeaks_(ConstPeakIterator first, ConstPeakIterator last, std::vector< double > &peak_values, Int direction, double resolution, ContinuousWaveletTransformNumIntegration &wt, double peak_bound_cwt) const | PeakPickerCWT | protected |
getParameters() const | DefaultParamHandler | |
getPeakArea_(const PeakArea_ &area, double &area_left, double &area_right) const | PeakPickerCWT | protected |
getPeakCentroid_(PeakArea_ &area) const | PeakPickerCWT | protected |
getPeakEndPoints_(PeakIterator first, PeakIterator last, PeakArea_ &area, Int distance_from_scan_border, Int &peak_left_index, Int &peak_right_index, ContinuousWaveletTransformNumIntegration &wt) const | PeakPickerCWT | protected |
getSubsections() const | DefaultParamHandler | |
GUI enum value | ProgressLogger | |
initializeWT_(ContinuousWaveletTransformNumIntegration &wt, const double peak_bound_in, double &peak_bound_ms_cwt) const | PeakPickerCWT | protected |
last_invoke_ | ProgressLogger | mutableprotected |
LogType enum name | ProgressLogger | |
logTypeToFactoryName_(LogType type) | ProgressLogger | protectedstatic |
lorentz_(const double height, const double lambda, const double pos, const double x) const | PeakPickerCWT | inlineprotected |
nextProgress() const | ProgressLogger | |
noise_level_ | PeakPickerCWT | protected |
NONE enum value | ProgressLogger | |
OpenMS::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
OpenMS::ProgressLogger::operator=(const ProgressLogger &other) | ProgressLogger | |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
optimization_ | PeakPickerCWT | protected |
param_ | DefaultParamHandler | protected |
peak_bound_ | PeakPickerCWT | protected |
peak_bound_ms2_level_ | PeakPickerCWT | protected |
peak_corr_bound_ | PeakPickerCWT | protected |
PeakIterator typedef | PeakPickerCWT | |
PeakPickerCWT() | PeakPickerCWT | |
pick(const MSSpectrum &input, MSSpectrum &output) const | PeakPickerCWT | |
pickExperiment(const PeakMap &input, PeakMap &output) | PeakPickerCWT | |
ProgressLogger() | ProgressLogger | |
ProgressLogger(const ProgressLogger &other) | ProgressLogger | |
radius_ | PeakPickerCWT | protected |
recursion_depth_ | ProgressLogger | protectedstatic |
scale_ | PeakPickerCWT | protected |
setLogType(LogType type) const | ProgressLogger | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setProgress(SignedSize value) const | ProgressLogger | |
signal_to_noise_ | PeakPickerCWT | protected |
startProgress(SignedSize begin, SignedSize end, const String &label) const | ProgressLogger | |
subsections_ | DefaultParamHandler | protected |
two_d_optimization_ | PeakPickerCWT | protected |
type_ | ProgressLogger | mutableprotected |
updateMembers_() override | PeakPickerCWT | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~PeakPickerCWT() override | PeakPickerCWT | |
~ProgressLogger() | ProgressLogger |