addEnzyme_(const DigestionEnzymeProtein *enzyme) | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inlineprotected |
beginEnzyme() const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
const_enzymes_ | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | protected |
ConstEnzymeIterator typedef | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | |
DigestionEnzymeDB(const String &db_file="") | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inlineprotected |
DigestionEnzymeDB(const DigestionEnzymeDB &enzymes_db)=delete | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | protected |
DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > class | ProteaseDB | friend |
endEnzyme() const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
enzyme_names_ | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | protected |
enzyme_regex_ | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | protected |
EnzymeIterator typedef | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | |
getAllCometNames(std::vector< String > &all_names) const | ProteaseDB | |
getAllCruxNames(std::vector< String > &all_names) const | ProteaseDB | |
getAllMSGFNames(std::vector< String > &all_names) const | ProteaseDB | |
getAllNames(std::vector< String > &all_names) const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
getAllOMSSANames(std::vector< String > &all_names) const | ProteaseDB | |
getAllXTandemNames(std::vector< String > &all_names) const | ProteaseDB | |
getEnzyme(const String &name) const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
getEnzymeByRegEx(const String &cleavage_regex) const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
getInstance() | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inlinestatic |
hasEnzyme(const String &name) const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
hasEnzyme(const DigestionEnzymeProtein *enzyme) const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
hasRegEx(const String &cleavage_regex) const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inline |
operator=(const DigestionEnzymeDB &enzymes_db)=delete | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | protected |
parseEnzyme_(Map< String, String > &values) const | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inlineprotected |
ProteaseDB() | ProteaseDB | protected |
readEnzymesFromFile_(const String &filename) | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inlineprotected |
~DigestionEnzymeDB() | DigestionEnzymeDB< DigestionEnzymeProtein, ProteaseDB > | inlinevirtual |