ProteinIdentification Member List

This is the complete list of members for ProteinIdentification, including all inherited members.

addPrimaryMSRunPath(const String &s, bool raw=false)	ProteinIdentification
addPrimaryMSRunPath(const StringList &s, bool raw=false)	ProteinIdentification
assignRanks()	ProteinIdentification
AVERAGE enum value	ProteinIdentification
clearMetaInfo()	MetaInfoInterface
computeCoverage(const std::vector< PeptideIdentification > &pep_ids)	ProteinIdentification
computeModifications(const std::vector< PeptideIdentification > &pep_ids, const StringList &skip_modifications)	ProteinIdentification
createIfNotExists_()	MetaInfoInterface	inlineprotected
date_	ProteinIdentification	protected
fillIndistinguishableGroupsWithSingletons()	ProteinIdentification
findHit(const String &accession)	ProteinIdentification
getDateTime() const	ProteinIdentification
getHits() const	ProteinIdentification
getHits()	ProteinIdentification
getIdentifier() const	ProteinIdentification
getIndistinguishableProteins() const	ProteinIdentification
getIndistinguishableProteins()	ProteinIdentification
getInferenceEngine() const	ProteinIdentification
getInferenceEngineVersion() const	ProteinIdentification
getKeys(std::vector< String > &keys) const	MetaInfoInterface
getKeys(std::vector< UInt > &keys) const	MetaInfoInterface
getMetaValue(const String &name, const DataValue &default_value=DataValue::EMPTY) const	MetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value=DataValue::EMPTY) const	MetaInfoInterface
getPrimaryMSRunPath(StringList &output, bool raw=false) const	ProteinIdentification
getProteinGroups() const	ProteinIdentification
getProteinGroups()	ProteinIdentification
getScoreType() const	ProteinIdentification
getSearchEngine() const	ProteinIdentification
getSearchEngineVersion() const	ProteinIdentification
getSearchParameters() const	ProteinIdentification
getSearchParameters()	ProteinIdentification
getSignificanceThreshold() const	ProteinIdentification
hasInferenceData() const	ProteinIdentification
hasInferenceEngineAsSearchEngine() const	ProteinIdentification
higher_score_better_	ProteinIdentification	protected
HitType typedef	ProteinIdentification
id_	ProteinIdentification	protected
indistinguishable_proteins_	ProteinIdentification	protected
insertHit(const ProteinHit &input)	ProteinIdentification
insertHit(ProteinHit &&input)	ProteinIdentification
insertIndistinguishableProteins(const ProteinGroup &group)	ProteinIdentification
insertProteinGroup(const ProteinGroup &group)	ProteinIdentification
isHigherScoreBetter() const	ProteinIdentification
isMetaEmpty() const	MetaInfoInterface
meta_	MetaInfoInterface	protected
MetaInfoInterface()	MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)	MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexcept	MetaInfoInterface
metaRegistry()	MetaInfoInterface	static
metaValueExists(const String &name) const	MetaInfoInterface
metaValueExists(UInt index) const	MetaInfoInterface
MONOISOTOPIC enum value	ProteinIdentification
NamesOfPeakMassType	ProteinIdentification	static
operator!=(const ProteinIdentification &rhs) const	ProteinIdentification
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const	MetaInfoInterface
operator=(const ProteinIdentification &)=default	ProteinIdentification
operator=(ProteinIdentification &&)=default	ProteinIdentification
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)	MetaInfoInterface
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexcept	MetaInfoInterface
operator==(const ProteinIdentification &rhs) const	ProteinIdentification
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const	MetaInfoInterface
PeakMassType enum name	ProteinIdentification
peptideIDsMergeable(const ProteinIdentification &id_run, const String &experiment_type) const	ProteinIdentification
protein_groups_	ProteinIdentification	protected
protein_hits_	ProteinIdentification	protected
protein_score_type_	ProteinIdentification	protected
protein_significance_threshold_	ProteinIdentification	protected
ProteinIdentification()	ProteinIdentification
ProteinIdentification(const ProteinIdentification &)=default	ProteinIdentification
ProteinIdentification(ProteinIdentification &&)=default	ProteinIdentification
removeMetaValue(const String &name)	MetaInfoInterface
removeMetaValue(UInt index)	MetaInfoInterface
search_engine_	ProteinIdentification	protected
search_engine_version_	ProteinIdentification	protected
search_parameters_	ProteinIdentification	protected
setDateTime(const DateTime &date)	ProteinIdentification
setHigherScoreBetter(bool higher_is_better)	ProteinIdentification
setHits(const std::vector< ProteinHit > &hits)	ProteinIdentification
setIdentifier(const String &id)	ProteinIdentification
setInferenceEngine(const String &search_engine)	ProteinIdentification
setInferenceEngineVersion(const String &inference_engine_version)	ProteinIdentification
setMetaValue(const String &name, const DataValue &value)	MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)	MetaInfoInterface
setPrimaryMSRunPath(const StringList &s, bool raw=false)	ProteinIdentification
setPrimaryMSRunPath(const StringList &s, MSExperiment &e)	ProteinIdentification
setScoreType(const String &type)	ProteinIdentification
setSearchEngine(const String &search_engine)	ProteinIdentification
setSearchEngineVersion(const String &search_engine_version)	ProteinIdentification
setSearchParameters(const SearchParameters &search_parameters)	ProteinIdentification
setSearchParameters(SearchParameters &&search_parameters)	ProteinIdentification
setSignificanceThreshold(double value)	ProteinIdentification
SIZE_OF_PEAKMASSTYPE enum value	ProteinIdentification
sort()	ProteinIdentification
~MetaInfoInterface()	MetaInfoInterface
~ProteinIdentification()	ProteinIdentification	virtual