OpenMS  2.5.0
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Properties Friends Macros Modules Pages
SVMWrapper Member List

This is the complete list of members for SVMWrapper, including all inherited members.

BORDER_LENGTH enum valueSVMWrapper
border_length_SVMWrapperprivate
C enum valueSVMWrapper
calculateGaussTable(Size border_length, double sigma, std::vector< double > &gauss_table)SVMWrapperstatic
CMD enum valueProgressLogger
computeKernelMatrix(svm_problem *problem1, svm_problem *problem2)SVMWrapper
computeKernelMatrix(const SVMData &problem1, const SVMData &problem2)SVMWrapper
createRandomPartitions(svm_problem *problem, Size number, std::vector< svm_problem * > &partitions)SVMWrapperstatic
createRandomPartitions(const SVMData &problem, Size number, std::vector< SVMData > &problems)SVMWrapperstatic
current_logger_ProgressLoggermutableprotected
DEGREE enum valueSVMWrapper
endProgress() constProgressLogger
GAMMA enum valueSVMWrapper
gauss_table_SVMWrapperprivate
gauss_tables_SVMWrapperprivate
getDecisionValues(svm_problem *data, std::vector< double > &decision_values)SVMWrapper
getDoubleParameter(SVM_parameter_type type)SVMWrapper
getIntParameter(SVM_parameter_type type)SVMWrapper
getLabels(svm_problem *problem, std::vector< double > &labels)SVMWrapperstatic
getLogType() constProgressLogger
getNumberOfEnclosedPoints_(double m1, double m2, const std::vector< std::pair< double, double > > &points)SVMWrapperprivate
getPValue(double sigma1, double sigma2, std::pair< double, double > point)SVMWrapper
getSignificanceBorders(svm_problem *data, std::pair< double, double > &borders, double confidence=0.95, Size number_of_runs=5, Size number_of_partitions=5, double step_size=0.01, Size max_iterations=1000000)SVMWrapper
getSignificanceBorders(const SVMData &data, std::pair< double, double > &sigmas, double confidence=0.95, Size number_of_runs=5, Size number_of_partitions=5, double step_size=0.01, Size max_iterations=1000000)SVMWrapper
getSVCProbabilities(struct svm_problem *problem, std::vector< double > &probabilities, std::vector< double > &prediction_labels)SVMWrapper
getSVRProbability()SVMWrapper
GUI enum valueProgressLogger
initParameters_()SVMWrapperprivate
KERNEL_TYPE enum valueSVMWrapper
kernel_type_SVMWrapperprivate
kernelOligo(const std::vector< std::pair< int, double > > &x, const std::vector< std::pair< int, double > > &y, const std::vector< double > &gauss_table, int max_distance=-1)SVMWrapperstatic
kernelOligo(const svm_node *x, const svm_node *y, const std::vector< double > &gauss_table, double sigma_square=0, Size max_distance=50)SVMWrapperstatic
last_invoke_ProgressLoggermutableprotected
loadModel(std::string modelFilename)SVMWrapper
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
mergePartitions(const std::vector< svm_problem * > &problems, Size except)SVMWrapperstatic
mergePartitions(const std::vector< SVMData > &problems, Size except, SVMData &merged_problem)SVMWrapperstatic
model_SVMWrapperprivate
nextGrid_(const std::vector< double > &start_values, const std::vector< double > &step_sizes, const std::vector< double > &end_values, const bool additive_step_sizes, std::vector< double > &actual_values)SVMWrapperprivate
nextProgress() constProgressLogger
NONE enum valueProgressLogger
NU enum valueSVMWrapper
OLIGO enum valueSVMWrapper
OLIGO_COMBINED enum valueSVMWrapper
operator=(const ProgressLogger &other)ProgressLogger
P enum valueSVMWrapper
param_SVMWrapperprivate
performCrossValidation(svm_problem *problem_ul, const SVMData &problem_l, const bool is_labeled, const std::map< SVM_parameter_type, double > &start_values_map, const std::map< SVM_parameter_type, double > &step_sizes_map, const std::map< SVM_parameter_type, double > &end_values_map, Size number_of_partitions, Size number_of_runs, std::map< SVM_parameter_type, double > &best_parameters, bool additive_step_sizes=true, bool output=false, String performances_file_name="performances.txt", bool mcc_as_performance_measure=false)SVMWrapper
predict(struct svm_problem *problem, std::vector< double > &predicted_labels)SVMWrapper
predict(const SVMData &problem, std::vector< double > &results)SVMWrapper
predict(const std::vector< svm_node * > &vectors, std::vector< double > &predicted_rts)SVMWrapper
printToVoid_(const char *)SVMWrapperprivatestatic
PROBABILITY enum valueSVMWrapper
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
saveModel(std::string modelFilename) constSVMWrapper
scaleData(svm_problem *data, Int max_scale_value=-1)SVMWrapper
setLogType(LogType type) constProgressLogger
setParameter(SVM_parameter_type type, Int value)SVMWrapper
setParameter(SVM_parameter_type type, double value)SVMWrapper
setProgress(SignedSize value) constProgressLogger
setTrainingSample(svm_problem *training_sample)SVMWrapper
setTrainingSample(SVMData &training_sample)SVMWrapper
setWeights(const std::vector< Int > &weight_labels, const std::vector< double > &weights)SVMWrapper
SIGMA enum valueSVMWrapper
sigma_SVMWrapperprivate
sigmas_SVMWrapperprivate
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
SVM_kernel_type enum nameSVMWrapper
SVM_parameter_type enum nameSVMWrapper
SVM_TYPE enum valueSVMWrapper
SVMWrapper()SVMWrapper
train(struct svm_problem *problem)SVMWrapper
train(SVMData &problem)SVMWrapper
training_data_SVMWrapperprivate
training_problem_SVMWrapperprivate
training_set_SVMWrapperprivate
type_ProgressLoggermutableprotected
~ProgressLogger()ProgressLogger
~SVMWrapper()SVMWrappervirtual