action_mode_ | SpectrumCanvas | protected |
actionModeChange() | SpectrumCanvas | signal |
ActionModes enum name | SpectrumCanvas | |
activateLayer(Size layer_index) override | Spectrum1DCanvas | slot |
activateSpectrum(Size index, bool repaint=true) | Spectrum1DCanvas | |
activeLayerIndex() const | SpectrumCanvas | |
addDataProcessing_(PeakMap &map, DataProcessing::ProcessingAction action) const | SpectrumCanvas | inlineprotected |
addLabelAnnotation_(const QPoint &screen_position, QString label_text) | Spectrum1DCanvas | protected |
addLayer(ExperimentSharedPtrType map, ODExperimentSharedPtrType od_map, const String &filename="") | SpectrumCanvas | |
addLayer(FeatureMapSharedPtrType map, const String &filename="") | SpectrumCanvas | |
addLayer(ConsensusMapSharedPtrType map, const String &filename="") | SpectrumCanvas | |
addLayer(std::vector< PeptideIdentification > &peptides, const String &filename="") | SpectrumCanvas | |
addPeakAnnotation(const PeakIndex &peak_index, const QString &text, const QColor &color) | Spectrum1DCanvas | |
addUserLabelAnnotation_(const QPoint &screen_position) | Spectrum1DCanvas | protected |
addUserPeakAnnotation_(PeakIndex near_peak) | Spectrum1DCanvas | protected |
adjustBuffer_() | SpectrumCanvas | protected |
aligned_peaks_indices_ | Spectrum1DCanvas | protected |
aligned_peaks_mz_delta_ | Spectrum1DCanvas | protected |
alignment_layer_1_ | Spectrum1DCanvas | protected |
alignment_layer_2_ | Spectrum1DCanvas | protected |
alignment_score_ | Spectrum1DCanvas | protected |
AM_MEASURE enum value | SpectrumCanvas | |
AM_TRANSLATE enum value | SpectrumCanvas | |
AM_ZOOM enum value | SpectrumCanvas | |
AreaType typedef | SpectrumCanvas | |
buffer_ | SpectrumCanvas | protected |
changeLayerFilterState(Size i, bool b) | SpectrumCanvas | slot |
changeLegendVisibility() | SpectrumCanvas | signal |
changeVisibility(Size i, bool b) | SpectrumCanvas | slot |
changeVisibleArea_(double lo, double hi, bool repaint=true, bool add_to_stack=false) | Spectrum1DCanvas | protected |
changeVisibleArea_(const AreaType &new_area, bool repaint=true, bool add_to_stack=false) override | Spectrum1DCanvas | protectedvirtual |
check_defaults_ | DefaultParamHandler | protected |
ConsensusMapSharedPtrType typedef | SpectrumCanvas | |
ConsensusMapType typedef | SpectrumCanvas | |
ConstExperimentSharedPtrType typedef | SpectrumCanvas | |
context_add_ | SpectrumCanvas | protected |
contextMenuEvent(QContextMenuEvent *e) override | Spectrum1DCanvas | protected |
current_layer_ | SpectrumCanvas | protected |
currentLayerParamtersChanged_() | Spectrum1DCanvas | protectedslot |
dataToWidget(const PeakType &peak, QPoint &point, bool flipped=false, bool percentage=true) | Spectrum1DCanvas | |
dataToWidget(double x, double y, QPoint &point, bool flipped=false, bool percentage=false) | Spectrum1DCanvas | |
dataToWidget_(double x, double y, QPoint &point) | SpectrumCanvas | inlineprotected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
DM_CONNECTEDLINES enum value | Spectrum1DCanvas | |
DM_PEAKS enum value | Spectrum1DCanvas | |
draw_interesting_MZs_ | Spectrum1DCanvas | protected |
draw_modes_ | Spectrum1DCanvas | protected |
drawAlignment(QPainter &painter) | Spectrum1DCanvas | |
drawAnnotations(Size layer_index, QPainter &painter) | Spectrum1DCanvas | |
drawCoordinates_(QPainter &painter, const PeakIndex &peak) | Spectrum1DCanvas | protected |
drawDashedLine_(const QPoint &from, const QPoint &to, QPainter &painter) | Spectrum1DCanvas | protected |
drawDeltas_(QPainter &painter, const PeakIndex &start, const PeakIndex &end) | Spectrum1DCanvas | protected |
drawHighlightedPeak_(Size layer_index, const PeakIndex &peak, QPainter &painter, bool draw_elongation=false) | Spectrum1DCanvas | protected |
DrawModes enum name | Spectrum1DCanvas | |
drawMZAtInterestingPeaks_(Size layer_index, QPainter &painter) | Spectrum1DCanvas | protected |
drawText_(QPainter &painter, QStringList text) | SpectrumCanvas | protected |
ensureAnnotationsWithinDataRange_() | Spectrum1DCanvas | protected |
enterEvent(QEvent *e) override | SpectrumCanvas | protected |
error_name_ | DefaultParamHandler | protected |
ExperimentSharedPtrType typedef | SpectrumCanvas | |
ExperimentType typedef | SpectrumCanvas | |
FeatureMapSharedPtrType typedef | SpectrumCanvas | |
FeatureMapType typedef | SpectrumCanvas | |
FeatureType typedef | SpectrumCanvas | |
findPeakAtPosition_(QPoint) | Spectrum1DCanvas | protected |
finishAdding_() override | Spectrum1DCanvas | protectedvirtual |
flipLayer(Size index) | Spectrum1DCanvas | |
flippedLayersExist() | Spectrum1DCanvas | |
focusOutEvent(QFocusEvent *e) override | SpectrumCanvas | protected |
getActionMode() const | SpectrumCanvas | inline |
getAlignedPeaksIndices() | Spectrum1DCanvas | |
getAlignmentScore() | Spectrum1DCanvas | |
getAlignmentSize() | Spectrum1DCanvas | |
getCurrentLayer() const | SpectrumCanvas | inline |
getCurrentLayer() | SpectrumCanvas | inline |
getCurrentLayer_() | SpectrumCanvas | inlineprotected |
getCurrentLayerIndex() const | SpectrumCanvas | inline |
getCurrentMaxIntensity() const | SpectrumCanvas | inline |
getCurrentMinIntensity() const | SpectrumCanvas | inline |
getDataRange() | SpectrumCanvas | |
getDefaults() const | DefaultParamHandler | |
getDrawMode() const | Spectrum1DCanvas | |
getIdentificationMZ_(const Size layer_index, const PeptideIdentification &peptide) const | SpectrumCanvas | protected |
getIntensityMode() const | SpectrumCanvas | inline |
getLayer(Size index) const | SpectrumCanvas | inline |
getLayer_(Size index) | SpectrumCanvas | inlineprotected |
getLayerCount() const | SpectrumCanvas | inline |
getLayerFlag(LayerData::Flags f) const | SpectrumCanvas | inline |
getLayerFlag(Size layer, LayerData::Flags f) const | SpectrumCanvas | inline |
getLayerName(Size i) | SpectrumCanvas | |
getMaxIntensity(Size index) const | SpectrumCanvas | inline |
getMinIntensity(Size index) const | SpectrumCanvas | inline |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getPercentageFactor() | SpectrumCanvas | |
getSnapFactor() | SpectrumCanvas | |
getSpectrumWidget() const | SpectrumCanvas | inline |
getSubsections() const | DefaultParamHandler | |
getVisibleArea() const | SpectrumCanvas | inline |
getVisibleConsensusData(ConsensusMapType &map) const | SpectrumCanvas | slot |
getVisibleFeatureData(FeatureMapType &map) const | SpectrumCanvas | slot |
getVisibleIdentifications(std::vector< PeptideIdentification > &peptides) const | SpectrumCanvas | slot |
getVisiblePeakData(ExperimentType &map) const | SpectrumCanvas | slot |
gridLinesShown() const | SpectrumCanvas | inline |
horizontalScrollBarChange(int value) override | Spectrum1DCanvas | slot |
IM_LOG enum value | SpectrumCanvas | |
IM_NONE enum value | SpectrumCanvas | |
IM_PERCENTAGE enum value | SpectrumCanvas | |
IM_SNAP enum value | SpectrumCanvas | |
intensity_mode_ | SpectrumCanvas | protected |
intensityModeChange_() override | Spectrum1DCanvas | protectedvirtual |
IntensityModes enum name | SpectrumCanvas | |
ion_ladder_visible_ | Spectrum1DCanvas | protected |
is_swapped_ | Spectrum1DCanvas | protected |
isDrawInterestingMZs() const | Spectrum1DCanvas | |
isIonLadderVisible() const | Spectrum1DCanvas | |
isMzToXAxis() | SpectrumCanvas | inline |
keyPressEvent(QKeyEvent *e) override | Spectrum1DCanvas | protected |
keyReleaseEvent(QKeyEvent *e) override | SpectrumCanvas | protected |
LabelMode enum name | Spectrum1DCanvas | |
last_mouse_pos_ | SpectrumCanvas | protected |
layerActivated(QWidget *w) | SpectrumCanvas | signal |
layerModficationChange(Size layer, bool modified) | SpectrumCanvas | signal |
layers_ | SpectrumCanvas | protected |
layerZoomChanged(QWidget *w) | SpectrumCanvas | signal |
leaveEvent(QEvent *e) override | SpectrumCanvas | protected |
LM_XABSOLUTE_YABSOLUTE enum value | Spectrum1DCanvas | |
LM_XABSOLUTE_YPERCENT enum value | Spectrum1DCanvas | |
LM_XPERCENT_YABSOLUTE enum value | Spectrum1DCanvas | |
LM_XPERCENT_YPERCENT enum value | Spectrum1DCanvas | |
measurement_start_ | SpectrumCanvas | protected |
measurement_start_point_ | Spectrum1DCanvas | protected |
mirror_mode_ | Spectrum1DCanvas | protected |
mirrorModeActive() | Spectrum1DCanvas | |
modificationStatus_(Size layer_index, bool modified) | SpectrumCanvas | protected |
mouseMoveEvent(QMouseEvent *e) override | Spectrum1DCanvas | protected |
mousePressEvent(QMouseEvent *e) override | Spectrum1DCanvas | protected |
mouseReleaseEvent(QMouseEvent *e) override | Spectrum1DCanvas | protected |
moving_annotations_ | Spectrum1DCanvas | protected |
mz_to_x_axis_ | SpectrumCanvas | protected |
mzToXAxis(bool mz_to_x_axis) | SpectrumCanvas | |
ODExperimentSharedPtrType typedef | SpectrumCanvas | |
operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
overall_data_range_ | SpectrumCanvas | protected |
paint(QPainter *paint_device, QPaintEvent *e) | Spectrum1DCanvas | |
paintEvent(QPaintEvent *e) override | Spectrum1DCanvas | protected |
paintGridLines_(QPainter &painter) override | Spectrum1DCanvas | protectedvirtual |
param_ | DefaultParamHandler | protected |
peak_penstyle_ | Spectrum1DCanvas | protected |
PeakType typedef | SpectrumCanvas | |
percentage_factor_ | SpectrumCanvas | protected |
performAlignment(Size layer_index_1, Size layer_index_2, const Param ¶m) | Spectrum1DCanvas | |
PointType typedef | SpectrumCanvas | |
preferencesChange() | SpectrumCanvas | signal |
recalculateAxes() | SpectrumCanvas | signal |
recalculateRanges_(UInt mz_dim, UInt rt_dim, UInt it_dim) | SpectrumCanvas | protected |
recalculateSnapFactor_() override | Spectrum1DCanvas | protectedvirtual |
removeLayer(Size layer_index) override | Spectrum1DCanvas | slot |
resetAlignment() | Spectrum1DCanvas | |
resetZoom(bool repaint=true) | SpectrumCanvas | slot |
resizeEvent(QResizeEvent *e) override | SpectrumCanvas | protected |
rubber_band_ | SpectrumCanvas | protected |
saveCurrentLayer(bool visible) override | Spectrum1DCanvas | virtual |
selected_peak_ | SpectrumCanvas | protected |
sendCursorStatus(double mz=-1.0, double rt=-1.0) | SpectrumCanvas | signal |
sendStatusMessage(std::string message, OpenMS::UInt time) | SpectrumCanvas | signal |
setAdditionalContextMenu(QMenu *menu) | SpectrumCanvas | slot |
setCurrentLayerParameters(const Param ¶m) | SpectrumCanvas | inline |
setCurrentLayerPeakPenStyle(Qt::PenStyle ps) | Spectrum1DCanvas | |
setDrawInterestingMZs(bool enable) | Spectrum1DCanvas | |
setDrawMode(DrawModes mode) | Spectrum1DCanvas | |
setFilters(const DataFilters &filters) | SpectrumCanvas | virtual |
setIntensityMode(IntensityModes mod) | SpectrumCanvas | inline |
setIonLadderVisible(bool show) | Spectrum1DCanvas | |
setLabel(LayerData::LabelType label) | SpectrumCanvas | inline |
setLayerFlag(LayerData::Flags f, bool value) | SpectrumCanvas | inline |
setLayerFlag(Size layer, LayerData::Flags f, bool value) | SpectrumCanvas | inline |
setLayerName(Size i, const String &name) | SpectrumCanvas | |
setMirrorModeActive(bool b) | Spectrum1DCanvas | |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
setSpectrumWidget(SpectrumWidget *widget) | SpectrumCanvas | inline |
setSwappedAxis(bool swapped) | Spectrum1DCanvas | |
setTextBox(const QString &html) | Spectrum1DCanvas | |
setVisibleArea(DRange< 2 > range) | Spectrum1DCanvas | slot |
show_alignment_ | Spectrum1DCanvas | protected |
show_grid_ | SpectrumCanvas | protected |
show_timing_ | SpectrumCanvas | protected |
showCurrentLayerPreferences() override | Spectrum1DCanvas | virtual |
showCurrentPeaksAs2D() | Spectrum1DCanvas | signal |
showCurrentPeaksAs3D() | Spectrum1DCanvas | signal |
showCurrentPeaksAsDIA() | Spectrum1DCanvas | signal |
showCurrentPeaksAsIonMobility() | Spectrum1DCanvas | signal |
showGridLines(bool show) | SpectrumCanvas | slot |
showMetaData(bool modifiable=false, Int index=-1) | SpectrumCanvas | virtual |
snap_factors_ | SpectrumCanvas | protected |
Spectrum1DCanvas(const Param &preferences, QWidget *parent=nullptr) | Spectrum1DCanvas | |
spectrum_widget_ | SpectrumCanvas | protected |
SpectrumCanvas(const Param &preferences, QWidget *parent=nullptr) | SpectrumCanvas | |
SpectrumConstIteratorType typedef | SpectrumCanvas | |
SpectrumType typedef | SpectrumCanvas | |
subsections_ | DefaultParamHandler | protected |
text_box_content_ | Spectrum1DCanvas | protected |
TOP_MARGIN | Spectrum1DCanvas | static |
translateBackward_() | SpectrumCanvas | protectedvirtual |
translateForward_() | SpectrumCanvas | protectedvirtual |
translateLeft_(Qt::KeyboardModifiers m) override | Spectrum1DCanvas | protectedvirtual |
translateRight_(Qt::KeyboardModifiers m) override | Spectrum1DCanvas | protectedvirtual |
update_(const char *caller_name) | SpectrumCanvas | protectedvirtual |
update_buffer_ | SpectrumCanvas | protected |
updateCursor_() | SpectrumCanvas | protectedslot |
updateHScrollbar(float, float, float, float) | SpectrumCanvas | signal |
updateLayer(Size i) override | Spectrum1DCanvas | slot |
updateMembers_() | DefaultParamHandler | protectedvirtual |
updatePercentageFactor_(Size layer_index) | Spectrum1DCanvas | protected |
updateScrollbars_() override | Spectrum1DCanvas | protectedvirtual |
updateVScrollbar(float, float, float, float) | SpectrumCanvas | signal |
verticalScrollBarChange(int value) | SpectrumCanvas | virtualslot |
visible_area_ | SpectrumCanvas | protected |
visibleAreaChanged(DRange< 2 > area) | SpectrumCanvas | signal |
warn_empty_defaults_ | DefaultParamHandler | protected |
wheelEvent(QWheelEvent *e) override | SpectrumCanvas | protected |
widgetToData(const QPoint &pos, bool percentage=false) | Spectrum1DCanvas | |
widgetToData(double x, double y, bool percentage=false) | Spectrum1DCanvas | |
widgetToData_(double x, double y) | SpectrumCanvas | inlineprotected |
widgetToData_(const QPoint &pos) | SpectrumCanvas | inlineprotected |
zoom_(int x, int y, bool zoom_in) override | Spectrum1DCanvas | protectedvirtual |
zoom_pos_ | SpectrumCanvas | protected |
zoom_stack_ | SpectrumCanvas | protected |
zoomAdd_(const AreaType &area) | SpectrumCanvas | protected |
zoomBack_() | SpectrumCanvas | protected |
zoomClear_() | SpectrumCanvas | protected |
zoomForward_() override | Spectrum1DCanvas | protectedvirtual |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~Spectrum1DCanvas() override | Spectrum1DCanvas | |
~SpectrumCanvas() override | SpectrumCanvas | |