OpenMS
2.5.0
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This is the complete list of members for SpectrumMetaDataLookup, including all inherited members.
addEntry_(Size index, double rt, Int scan_number, const String &native_id) | SpectrumLookup | protected |
addMissingRTsToPeptideIDs(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false) | SpectrumMetaDataLookup | static |
addMissingSpectrumReferences(std::vector< PeptideIdentification > &peptides, const String &filename, bool stop_on_error=false, bool override_spectra_data=false, bool override_spectra_references=false, std::vector< ProteinIdentification > proteins=std::vector< ProteinIdentification >()) | SpectrumMetaDataLookup | static |
addReferenceFormat(const String ®exp) | SpectrumLookup | |
default_scan_regexp | SpectrumLookup | static |
empty() const | SpectrumLookup | |
extractScanNumber(const String &native_id, const boost::regex &scan_regexp, bool no_error=false) | SpectrumLookup | static |
extractScanNumber(const String &native_id, const String &native_id_type_accession) | SpectrumLookup | static |
findByIndex(Size index, bool count_from_one=false) const | SpectrumLookup | |
findByNativeID(const String &native_id) const | SpectrumLookup | |
findByReference(const String &spectrum_ref) const | SpectrumLookup | |
findByRegExpMatch_(const String &spectrum_ref, const String ®exp, const boost::smatch &match) const | SpectrumLookup | protected |
findByRT(double rt) const | SpectrumLookup | |
findByScanNumber(Size scan_number) const | SpectrumLookup | |
getSpectrumMetaData(Size index, SpectrumMetaData &meta) const | SpectrumMetaDataLookup | |
getSpectrumMetaData(const MSSpectrum &spectrum, SpectrumMetaData &meta, const boost::regex &scan_regexp=boost::regex(), const std::map< Size, double > &precursor_rts=(std::map< Size, double >())) | SpectrumMetaDataLookup | static |
getSpectrumMetaData(const String &spectrum_ref, SpectrumMetaData &meta, MetaDataFlags flags=MDF_ALL) const | SpectrumMetaDataLookup | |
ids_ | SpectrumLookup | protected |
MDF_ALL | SpectrumMetaDataLookup | static |
MDF_MSLEVEL | SpectrumMetaDataLookup | static |
MDF_NATIVEID | SpectrumMetaDataLookup | static |
MDF_PRECURSORCHARGE | SpectrumMetaDataLookup | static |
MDF_PRECURSORMZ | SpectrumMetaDataLookup | static |
MDF_PRECURSORRT | SpectrumMetaDataLookup | static |
MDF_RT | SpectrumMetaDataLookup | static |
MDF_SCANNUMBER | SpectrumMetaDataLookup | static |
metadata_ | SpectrumMetaDataLookup | protected |
MetaDataFlags typedef | SpectrumMetaDataLookup | |
n_spectra_ | SpectrumLookup | protected |
operator=(const SpectrumMetaDataLookup &) | SpectrumMetaDataLookup | private |
readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp, bool get_precursor_rt=false) | SpectrumMetaDataLookup | inline |
OpenMS::SpectrumLookup::readSpectra(const SpectrumContainer &spectra, const String &scan_regexp=default_scan_regexp) | SpectrumLookup | inline |
reference_formats | SpectrumLookup | |
regexp_name_list_ | SpectrumLookup | protected |
regexp_names_ | SpectrumLookup | protectedstatic |
rt_tolerance | SpectrumLookup | |
rts_ | SpectrumLookup | protected |
scan_regexp_ | SpectrumLookup | protected |
scans_ | SpectrumLookup | protected |
setScanRegExp_(const String &scan_regexp) | SpectrumLookup | protected |
setSpectraDataRef(const String &spectra_data) | SpectrumMetaDataLookup | inline |
spectra_data_ref | SpectrumMetaDataLookup | protected |
SpectrumLookup() | SpectrumLookup | |
SpectrumLookup(const SpectrumLookup &) | SpectrumLookup | private |
SpectrumMetaDataLookup() | SpectrumMetaDataLookup | inline |
SpectrumMetaDataLookup(const SpectrumMetaDataLookup &) | SpectrumMetaDataLookup | private |
~SpectrumLookup() | SpectrumLookup | virtual |
~SpectrumMetaDataLookup() override | SpectrumMetaDataLookup | inline |