aa_to_index_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
basicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
check_defaults_ | DefaultParamHandler | protected |
DefaultParamHandler(const String &name) | DefaultParamHandler | |
DefaultParamHandler(const DefaultParamHandler &rhs) | DefaultParamHandler | |
DefaultParamHandler() | DefaultParamHandler | private |
defaults_ | DefaultParamHandler | protected |
defaultsToParam_() | DefaultParamHandler | protected |
error_name_ | DefaultParamHandler | protected |
generateDescriptorSet_(AASequence peptide, Size position, IonType type, Size precursor_charge, DescriptorSet &desc_set) | SvmTheoreticalSpectrumGenerator | protected |
getDefaults() const | DefaultParamHandler | |
getIonTypes() | SvmTheoreticalSpectrumGenerator | inline |
getName() const | DefaultParamHandler | |
getParameters() const | DefaultParamHandler | |
getSubsections() const | DefaultParamHandler | |
helicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
hide_type_ | SvmTheoreticalSpectrumGenerator | protected |
hydrophobicity_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
initializedMaps_ | SvmTheoreticalSpectrumGenerator | protectedstatic |
initializeMaps_() | SvmTheoreticalSpectrumGenerator | protectedstatic |
IntensityMap typedef | SvmTheoreticalSpectrumGenerator | protected |
load() | SvmTheoreticalSpectrumGenerator | |
mp_ | SvmTheoreticalSpectrumGenerator | protected |
operator=(const SvmTheoreticalSpectrumGenerator &tsg) | SvmTheoreticalSpectrumGenerator | |
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs) | DefaultParamHandler | virtual |
operator==(const DefaultParamHandler &rhs) const | DefaultParamHandler | virtual |
param_ | DefaultParamHandler | protected |
precursor_charge_ | SvmTheoreticalSpectrumGenerator | protected |
ResidueTypeToString_(Residue::ResidueType type) | SvmTheoreticalSpectrumGenerator | protected |
scaleDescriptorSet_(DescriptorSet &desc, double lower, double upper) | SvmTheoreticalSpectrumGenerator | protected |
scaleSingleFeature_(double &value, double feature_min, double feature_max, double lower=-1.0, double upper=1.0) | SvmTheoreticalSpectrumGenerator | inlineprotected |
setName(const String &name) | DefaultParamHandler | |
setParameters(const Param ¶m) | DefaultParamHandler | |
simulate(PeakSpectrum &spectrum, const AASequence &peptide, boost::random::mt19937_64 &rng, Size precursor_charge) | SvmTheoreticalSpectrumGenerator | |
subsections_ | DefaultParamHandler | protected |
SvmTheoreticalSpectrumGenerator() | SvmTheoreticalSpectrumGenerator | |
SvmTheoreticalSpectrumGenerator(const SvmTheoreticalSpectrumGenerator &source) | SvmTheoreticalSpectrumGenerator | |
SvmTheoreticalSpectrumGeneratorTrainer class | SvmTheoreticalSpectrumGenerator | friend |
updateMembers_() override | SvmTheoreticalSpectrumGenerator | protectedvirtual |
warn_empty_defaults_ | DefaultParamHandler | protected |
~DefaultParamHandler() | DefaultParamHandler | virtual |
~SvmTheoreticalSpectrumGenerator() override | SvmTheoreticalSpectrumGenerator | |