Get scores from ID structures for FDR

Fills the scores_labels vector from an ID data structure. More...

Functions
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const std::vector< ProteinIdentification::ProteinGroup > &grps, const std::unordered_set< std::string > &decoy_accs)
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const ProteinIdentification &id)
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const PeptideIdentification &id, bool all_hits, int charge, const String &identifier)
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const PeptideIdentification &id, bool all_hits, const String &identifier)
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const PeptideIdentification &id, int charge, const String &identifier)
template<typename IDType , typename std::enable_if< IsIDType< IDType >::value >::type * = nullptr>
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const IDType &id, const String &identifier)
template<class ... Args>
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const PeptideIdentification &id, bool all_hits, Args &&... args)
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const PeptideHit &hit, int charge)
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const PeptideIdentification &id, int charge)
template<typename HitType , typename std::enable_if< IsHitType< HitType >::value >::type * = nullptr>
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const HitType &hit)
template<typename IDType , typename std::enable_if< IsIDType< IDType >::value >::type * = nullptr>
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const IDType &id)
template<class ... Args>
static void	getScores_ (ScoreToTgtDecLabelPairs &scores_labels, const std::vector< PeptideIdentification > &ids, Args &&... args)

Detailed Description

Fills the scores_labels vector from an ID data structure.

Parameters

scores_labels

Pairs of scores and boolean target decoy labels to be filled. target = true.

Just use the one you need.

Function Documentation

getScores_() [1/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const HitType &  hit  )

inlinestatic

References IDScoreGetterSetter::checkTDAnnotation_(), and IDScoreGetterSetter::getTDLabel_().

getScores_() [2/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const IDType &  id  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [3/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const IDType &  id, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [4/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const PeptideHit &  hit, int  charge  )

inlinestatic

References IDScoreGetterSetter::checkTDAnnotation_(), PeptideHit::getCharge(), PeptideHit::getScore(), and IDScoreGetterSetter::getTDLabel_().

getScores_() [5/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const PeptideIdentification &  id, bool  all_hits, Args &&...  args  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [6/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const PeptideIdentification &  id, bool  all_hits, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [7/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const PeptideIdentification &  id, bool  all_hits, int  charge, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [8/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const PeptideIdentification &  id, int  charge  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [9/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const PeptideIdentification &  id, int  charge, const String &  identifier  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [10/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const ProteinIdentification &  id  )

inlinestatic

References IDScoreGetterSetter::checkTDAnnotation_(), ProteinHit::getScore(), and IDScoreGetterSetter::getTDLabel_().

getScores_() [11/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const std::vector< PeptideIdentification > &  ids, Args &&...  args  )

inlinestatic

References IDScoreGetterSetter::getScores_().

getScores_() [12/12]

static void getScores_ ( ScoreToTgtDecLabelPairs &  scores_labels, const std::vector< ProteinIdentification::ProteinGroup > &  grps, const std::unordered_set< std::string > &  decoy_accs  )

static

Referenced by IDScoreGetterSetter::getPeptideScoresFromMap_(), and IDScoreGetterSetter::getScores_().