OpenMS
2.6.0
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#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/StandardDeclarations.h>
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/Macros.h>
#include <OpenMS/CHEMISTRY/AASequence.h>
#include <OpenMS/METADATA/CVTerm.h>
#include <OpenMS/METADATA/CVTermList.h>
#include <OpenMS/METADATA/CVTermListInterface.h>
#include <OpenMS/CHEMISTRY/Residue.h>
#include <boost/numeric/conversion/cast.hpp>
Go to the source code of this file.
Classes | |
struct | Configuration |
struct | CV |
struct | Protein |
class | RetentionTime |
This class stores a retention time structure that is used in TargetedExperiment (representing a TraML file) More... | |
class | PeptideCompound |
Base class to represent either a peptide or a compound. More... | |
class | Compound |
Represents a compound (small molecule) More... | |
class | Peptide |
Represents a peptide (amino acid sequence) More... | |
struct | Peptide::Modification |
struct | Contact |
struct | Publication |
struct | Instrument |
struct | Prediction |
struct | Interpretation |
Product ion interpretation. More... | |
struct | TraMLProduct |
Represents a product ion. More... | |
Namespaces | |
OpenMS | |
Main OpenMS namespace. | |
OpenMS::TargetedExperimentHelper | |
This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget). | |
Functions | |
OpenMS::AASequence | getAASequence (const Peptide &peptide) |
helper function that converts a Peptide object to a AASequence object More... | |
void | setModification (int location, int max_size, String modification, OpenMS::AASequence &aas) |
helper function that sets a modification on a AASequence object More... | |