OpenMS::TargetedExperimentHelper Namespace Reference

This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget). More...

Classes
class	Compound
	Represents a compound (small molecule) More...
struct	Configuration
struct	Contact
struct	CV
struct	Instrument
struct	Interpretation
	Product ion interpretation. More...
class	Peptide
	Represents a peptide (amino acid sequence) More...
class	PeptideCompound
	Base class to represent either a peptide or a compound. More...
struct	Prediction
struct	Protein
struct	Publication
class	RetentionTime
	This class stores a retention time structure that is used in TargetedExperiment (representing a TraML file) More...
struct	TraMLProduct
	Represents a product ion. More...

Functions
OpenMS::AASequence	getAASequence (const Peptide &peptide)
	helper function that converts a Peptide object to a AASequence object More...
void	setModification (int location, int max_size, String modification, OpenMS::AASequence &aas)
	helper function that sets a modification on a AASequence object More...

Detailed Description

This class stores helper structures that are used in multiple classes of the TargetedExperiment (e.g. ReactionMonitoringTransition and IncludeExcludeTarget).

Function Documentation

getAASequence()

OpenMS::AASequence OpenMS::TargetedExperimentHelper::getAASequence

(

const Peptide &

peptide

)

helper function that converts a Peptide object to a AASequence object

setModification()

void OpenMS::TargetedExperimentHelper::setModification	(	int	location,
		int	max_size,
		String	modification,
		OpenMS::AASequence &	aas
	)

helper function that sets a modification on a AASequence object