ConsensusIDAlgorithmPEPMatrix Member List

This is the complete list of members for ConsensusIDAlgorithmPEPMatrix, including all inherited members.

alignment_	ConsensusIDAlgorithmPEPMatrix	private
apply(std::vector< PeptideIdentification > &ids, const std::map< String, String > &se_info, Size number_of_runs=0)	ConsensusIDAlgorithm
apply(std::vector< PeptideIdentification > &ids, Size number_of_runs=0)	ConsensusIDAlgorithm
apply_(std::vector< PeptideIdentification > &ids, const std::map< String, String > &se_info, SequenceGrouping &results) override	ConsensusIDAlgorithmSimilarity	privatevirtual
check_defaults_	DefaultParamHandler	protected
compareChargeStates_(Int &recorded_charge, Int new_charge, const AASequence &peptide)	ConsensusIDAlgorithm	protected
ConsensusIDAlgorithm()	ConsensusIDAlgorithm	protected
ConsensusIDAlgorithm(const ConsensusIDAlgorithm &)	ConsensusIDAlgorithm	private
ConsensusIDAlgorithmPEPMatrix()	ConsensusIDAlgorithmPEPMatrix
ConsensusIDAlgorithmPEPMatrix(const ConsensusIDAlgorithmPEPMatrix &)	ConsensusIDAlgorithmPEPMatrix	private
ConsensusIDAlgorithmSimilarity()	ConsensusIDAlgorithmSimilarity	protected
ConsensusIDAlgorithmSimilarity(const ConsensusIDAlgorithmSimilarity &)	ConsensusIDAlgorithmSimilarity	private
considered_hits_	ConsensusIDAlgorithm	protected
count_empty_	ConsensusIDAlgorithm	protected
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
error_name_	DefaultParamHandler	protected
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSimilarity_(AASequence seq1, AASequence seq2) override	ConsensusIDAlgorithmPEPMatrix	privatevirtual
getSubsections() const	DefaultParamHandler
keep_old_scores_	ConsensusIDAlgorithm	protected
min_support_	ConsensusIDAlgorithm	protected
number_of_runs_	ConsensusIDAlgorithm	protected
operator=(const ConsensusIDAlgorithmPEPMatrix &)	ConsensusIDAlgorithmPEPMatrix	private
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler	virtual
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
scoring_method_	ConsensusIDAlgorithmPEPMatrix	private
SeqAnScore typedef	ConsensusIDAlgorithmPEPMatrix	private
SeqAnSequence typedef	ConsensusIDAlgorithmPEPMatrix	private
SequenceGrouping typedef	ConsensusIDAlgorithm	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
similarities_	ConsensusIDAlgorithmSimilarity	protected
SimilarityCache typedef	ConsensusIDAlgorithmSimilarity	protected
subsections_	DefaultParamHandler	protected
updateMembers_() override	ConsensusIDAlgorithmPEPMatrix	privatevirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")	DefaultParamHandler	static
~ConsensusIDAlgorithm() override	ConsensusIDAlgorithm
~DefaultParamHandler()	DefaultParamHandler	virtual