|
|
IdentificationData::ModifyMultiIndexAddScore (OpenMS) |
| IdentificationData::ModifyMultiIndexRemoveParentMatches (OpenMS) |
| _Alloc_base (KDTree) |
MoleculeParentMatch (OpenMS::IdentificationDataInternal) |
| _Base_iterator (KDTree) |
MoleculeQueryMatch (OpenMS::IdentificationDataInternal) |
| _Bracket_accessor (KDTree) |
MorpheusScore (OpenMS) |
| _Iterator (KDTree) |
MorphologicalFilter (OpenMS) |
| _Node (KDTree) |
MRMAssay (OpenMS) |
| _Node_base (KDTree) |
MRMBatchFeatureSelector (OpenMS) |
| _Node_compare (KDTree) |
MRMDecoy (OpenMS) |
| _Region (KDTree) |
MRMFeature (OpenMS) |
|
|
MRMFeatureFilter (OpenMS) |
| MRMFeatureFinderScoring (OpenMS) |
| AAcid_ (seqan) |
MRMFeatureOpenMS (OpenMS) |
| AAIndex (OpenMS) |
MRMFeaturePicker (OpenMS) |
| AASequence (OpenMS) |
MRMFeaturePickerFile (OpenMS) |
| OPXLDataStructs::AASeqWithMass (OpenMS) |
MRMFeatureQC (OpenMS) |
| OPXLDataStructs::AASeqWithMassComparator (OpenMS) |
MRMFeatureQCFile (OpenMS) |
| FuzzyStringComparator::AbortComparison (OpenMS) |
MRMFeatureSelector (OpenMS) |
| AbsoluteQuantitation (OpenMS) |
MRMFeatureSelector_test (OpenMS) |
| AbsoluteQuantitationMethod (OpenMS) |
MRMFeatureSelectorQMIP (OpenMS) |
| AbsoluteQuantitationMethodFile (OpenMS) |
MRMFeatureSelectorScore (OpenMS) |
| AbsoluteQuantitationStandards (OpenMS) |
MRMFragmentSelection (OpenMS) |
| AbsoluteQuantitationStandardsFile (OpenMS) |
MRMIonSeries (OpenMS) |
| SiriusMSFile::AccessionInfo (OpenMS) |
MRMMapping (OpenMS) |
| AccurateMassSearchEngine (OpenMS) |
MRMRTNormalizer (OpenMS) |
| AccurateMassSearchResult (OpenMS) |
MRMScoring (OpenSwath) |
| Acquisition (OpenMS) |
MRMTransitionGroup (OpenMS) |
| AcquisitionInfo (OpenMS) |
MRMTransitionGroupPicker (OpenMS) |
| AcquisitionInfoVisualizer (OpenMS) |
MS1FeatureMerger (OpenMS) |
| AcquisitionVisualizer (OpenMS) |
MS1Signal (OpenMS) |
| AcqusHandler (OpenMS::Internal) |
MS2ConsensusSpectrum (OpenMS) |
| AdaptedIdentity (seqan) |
MS2Feature (OpenMS) |
| Adduct (OpenMS) |
MS2File (OpenMS) |
| AdductInfo (OpenMS) |
MS2Fragment (OpenMS) |
| MSstatsFile::AggregatedConsensusInfo (OpenMS) |
Ms2IdentificationRate (OpenMS) |
| AhoCorasickAmbiguous (OpenMS) |
MS2Info (OpenMS) |
| always_true (KDTree) |
Ms2SpectrumStats (OpenMS) |
| PepXMLFile::AminoAcidModification (OpenMS) |
MSChromatogram (OpenMS) |
| MzIdentMLDOMHandler::AnalysisSoftware (OpenMS::Internal) |
MSDataAggregatingConsumer (OpenMS) |
| MSQuantifications::AnalysisSummary (OpenMS) |
MSDataCachedConsumer (OpenMS) |
| NucleicAcidSearchEngine::AnnotatedHit |
MSDataChainingConsumer (OpenMS) |
| SimpleSearchEngineAlgorithm::AnnotatedHit_ (OpenMS) |
MSDataSqlConsumer (OpenMS) |
| Annotation1DCaret (OpenMS) |
MSDataStoringConsumer (OpenMS) |
| Annotation1DDistanceItem (OpenMS) |
MSDataTransformingConsumer (OpenMS) |
| Annotation1DItem (OpenMS) |
MSDataWritingConsumer (OpenMS) |
| Annotation1DPeakItem (OpenMS) |
ProteinResolver::MSDGroup (OpenMS) |
| Annotation1DTextItem (OpenMS) |
MSExperiment (OpenMS) |
| Annotations1DContainer (OpenMS) |
ExperimentalDesign::MSFileSectionEntry (OpenMS) |
| AnnotationStatistics (OpenMS) |
MsInspectFile (OpenMS) |
| AppliedProcessingStep (OpenMS::IdentificationDataInternal) |
MSNumpressCoder (OpenMS) |
| AreaIterator (OpenMS::Internal) |
MSPeak (OpenMS) |
| AScore (OpenMS) |
MSPFile (OpenMS) |
| MSQuantifications::Assay (OpenMS) |
MSPGenericFile (OpenMS) |
| AsymmetricStatistics (OpenMS::Math) |
MSPGenericFile_friend (OpenMS) |
| QcMLFile::Attachment (OpenMS) |
MSQuantifications (OpenMS) |
| AverageLinkage (OpenMS) |
MSSim (OpenMS) |
| AveragePosition (OpenMS::Math) |
MSSpectrum (OpenMS) |
| AxisPainter (OpenMS) |
MSstatsFile (OpenMS) |
| AxisTickCalculator (OpenMS) |
MSstatsFile::MSstatsLine_ (OpenMS) |
| AxisWidget (OpenMS) |
MSstatsFile::MSstatsTMTLine_ (OpenMS) |
|
|
MultiGradient (OpenMS) |
| MultiGradientSelector (OpenMS) |
| BackgroundControl (OpenMS) |
MultiplexClustering (OpenMS) |
| BackgroundIntensityBin (OpenMS) |
MultiplexDeltaMasses (OpenMS) |
| Base64 (OpenMS) |
MultiplexDeltaMassesGenerator (OpenMS) |
| BaseException (OpenMS::Exception) |
MultiplexClustering::MultiplexDistance (OpenMS) |
| BaseFeature (OpenMS) |
MultiplexFilteredMSExperiment (OpenMS) |
| BaseGroupFinder (OpenMS) |
MultiplexFilteredPeak (OpenMS) |
| BaseLabeler (OpenMS) |
MultiplexFiltering (OpenMS) |
| BaseModel (OpenMS) |
MultiplexFilteringCentroided (OpenMS) |
| BaseSuperimposer (OpenMS) |
MultiplexFilteringProfile (OpenMS) |
| BaseVisualizer (OpenMS) |
MultiplexIsotopicPeakPattern (OpenMS) |
| BaseVisualizerGUI (OpenMS) |
MultiplexSatelliteCentroided (OpenMS) |
| BasicProteinInferenceAlgorithm (OpenMS) |
MultiplexSatelliteProfile (OpenMS) |
| BasicStatistics (OpenMS::Math) |
mySqrt (OpenSwath) |
| BayesianProteinInferenceAlgorithm (OpenMS) |
MzCalibration (OpenMS) |
| BernNorm (OpenMS) |
MzDataFile (OpenMS) |
| BiGaussFitter1D (OpenMS) |
MzDataHandler (OpenMS::Internal) |
| BiGaussModel (OpenMS) |
MzDataValidator (OpenMS::Internal) |
| BilinearInterpolation (OpenMS::Math) |
MzIdentMLDOMHandler (OpenMS::Internal) |
| MzMLHandlerHelper::BinaryData (OpenMS::Internal) |
MzIdentMLFile (OpenMS) |
| BinaryDataArray (OpenMS::Interfaces) |
MzIdentMLHandler (OpenMS::Internal) |
| BinaryTreeNode (OpenMS) |
MzIdentMLValidator (OpenMS::Internal) |
| EnzymaticDigestionLogModel::BindingSite_ (OpenMS) |
Peak1D::MZLess (OpenMS) |
| BinnedSharedPeakCount (OpenMS) |
Peak2D::MZLess (OpenMS) |
| BinnedSpectralContrastAngle (OpenMS) |
MSChromatogram::MZLess (OpenMS) |
| BinnedSpectrum (OpenMS) |
MzMLFile (OpenMS) |
| TargetedSpectraExtractor::BinnedSpectrumComparator (OpenMS) |
MzMLHandler (OpenMS::Internal) |
| BinnedSpectrumCompareFunctor (OpenMS) |
MzMLHandlerHelper (OpenMS::Internal) |
| BinnedSumAgreeingIntensities (OpenMS) |
MzMLSpectrumDecoder (OpenMS) |
| BitsPerValue< AAcid > (seqan) |
MzMLSqliteHandler (OpenMS::Internal) |
| BK_PrecPolicy (OpenMS::StringConversions) |
MzMLSqliteSwathHandler (OpenMS::Internal) |
| FeatureFinderAlgorithmIsotopeWavelet::BoxElement (OpenMS) |
MzMLSwathFileConsumer (OpenMS) |
| IsotopeWaveletTransform::BoxElement (OpenMS) |
MzMLValidator (OpenMS::Internal) |
| BSpline (eol_bspline) |
MzQuantMLFile (OpenMS) |
| BSpline2d (OpenMS) |
MzQuantMLHandler (OpenMS::Internal) |
| BufferOverflow (OpenMS::Exception) |
MzQuantMLValidator (OpenMS::Internal) |
| QTCluster::BulkData (OpenMS) |
MzTab (OpenMS) |
| Bzip2Ifstream (OpenMS) |
MzTabAssayMetaData (OpenMS) |
| Bzip2InputStream (OpenMS) |
MzTabBoolean (OpenMS) |
|
|
MzTabContactMetaData (OpenMS) |
| MzTabCVMetaData (OpenMS) |
| CachedmzML (OpenMS) |
MzTabDouble (OpenMS) |
| CachedMzMLHandler (OpenMS::Internal) |
MzTabDoubleList (OpenMS) |
| CachedSwathFileConsumer (OpenMS) |
MzTabFile (OpenMS) |
| InternalCalibration::CalibrantStats_ (OpenMS) |
MzTabInstrumentMetaData (OpenMS) |
| CalibrationData (OpenMS) |
MzTabInteger (OpenMS) |
| CentroidData (OpenMS) |
MzTabIntegerList (OpenMS) |
| CentroidPeak (OpenMS) |
MzTabMetaData (OpenMS) |
| ItraqConstants::ChannelInfo (OpenMS) |
MzTabModification (OpenMS) |
| IsotopeCluster::ChargedIndexSet (OpenMS) |
MzTabModificationList (OpenMS) |
| ChargePair (OpenMS) |
MzTabModificationMetaData (OpenMS) |
| Chromatogram (OpenMS::Interfaces) |
MzTabMSRunMetaData (OpenMS) |
| MzMLHandler::ChromatogramData (OpenMS::Internal) |
MzTabNucleicAcidSectionRow (OpenMS) |
| ChromatogramExtractor (OpenMS) |
MzTabOligonucleotideSectionRow (OpenMS) |
| ChromatogramExtractorAlgorithm (OpenMS) |
MzTabOSMSectionRow (OpenMS) |
| ChromatogramMeta (OpenMS::Interfaces) |
MzTabParameter (OpenMS) |
| ChromatogramPeak (OpenMS) |
MzTabParameterList (OpenMS) |
| ChromatogramSettings (OpenMS) |
MzTabPeptideSectionRow (OpenMS) |
| ChromatogramTools (OpenMS) |
MzTabProteinSectionRow (OpenMS) |
| ChromeleonFile (OpenMS) |
MzTabPSMSectionRow (OpenMS) |
| ChromExtractParams (OpenMS) |
MzTabSampleMetaData (OpenMS) |
| MSSpectrum::Chunk (OpenMS) |
MzTabSmallMoleculeSectionRow (OpenMS) |
| MSSpectrum::Chunks (OpenMS) |
MzTabSoftwareMetaData (OpenMS) |
| Citation (OpenMS) |
MzTabSpectraRef (OpenMS) |
| EnzymaticDigestionLogModel::CleavageModel_ (OpenMS) |
MzTabString (OpenMS) |
| OPXLDataStructs::CLSMScoreComparator (OpenMS) |
MzTabStringList (OpenMS) |
| ClusterAnalyzer (OpenMS) |
MzTabStudyVariableMetaData (OpenMS) |
| ClusteredMS2ConsensusSpectrum (OpenMS) |
MZTrafoModel (OpenMS) |
| ClusterFunctor (OpenMS) |
MzXMLFile (OpenMS) |
| ClusterHierarchical (OpenMS) |
MzXMLHandler (OpenMS::Internal) |
| ClusteringGrid (OpenMS) |
|
| ClusterProxyKD (OpenMS) |
| MzTab::CMMzTabStream (OpenMS) |
NASequence (OpenMS) |
| CmpHypothesesByScore (OpenMS) |
SplineInterpolatedPeaks::Navigator (OpenMS) |
| CmpMassTraceByMZ (OpenMS) |
QTCluster::Neighbor (OpenMS) |
| CoarseIsotopePatternGenerator (OpenMS) |
NetworkGetRequest (OpenMS) |
| ColorSelector (OpenMS) |
NeutralLossDiffFilter (OpenMS) |
| ConsensusMap::ColumnHeader (OpenMS) |
NeutralLossMarker (OpenMS) |
| TargetedSpectraExtractor::Comparator (OpenMS) |
NLargest (OpenMS) |
| MapAlignmentAlgorithmSpectrumAlignment::Compare (OpenMS) |
SignalToNoiseEstimatorMedianRapid::NoiseEstimator (OpenMS) |
| AccurateMassSearchEngine::CompareEntryAndMass_ (OpenMS) |
_Alloc_base::NoLeakAlloc (KDTree) |
| CompareTypeImpl< AAcid, char > (seqan) |
NonNegativeLeastSquaresSolver (OpenMS) |
| CompareTypeImpl< AAcid, uint8_t > (seqan) |
NoopMSDataConsumer (OpenMS) |
| ComplementFilter (OpenMS) |
NoopMSDataWritingConsumer (OpenMS) |
| ComplementMarker (OpenMS) |
Normalizer (OpenMS) |
| CompleteLinkage (OpenMS) |
FeatureFinderDefs::NoSuccessor (OpenMS) |
| CompNovoIdentification (OpenMS) |
NotImplemented (OpenMS::Exception) |
| CompNovoIdentificationBase (OpenMS) |
NucleicAcidSearchEngine |
| CompNovoIdentificationCID (OpenMS) |
NucleicAcidSpectrumGenerator (OpenMS) |
| CompNovoIonScoring (OpenMS) |
NullPointer (OpenMS::Exception) |
| CompNovoIonScoringBase (OpenMS) |
MSNumpressCoder::NumpressConfig (OpenMS) |
| CompNovoIonScoringCID (OpenMS) |
|
| Compomer (OpenMS) |
| MRMFeatureQC::ComponentGroupPairQCs (OpenMS) |
O18Labeler (OpenMS) |
| MRMFeaturePicker::ComponentGroupParams (OpenMS) |
OfflinePrecursorIonSelection (OpenMS) |
| MRMFeatureQC::ComponentGroupQCs (OpenMS) |
OMS_TranslateTableAAToChar_ (seqan) |
| MRMFeaturePicker::ComponentParams (OpenMS) |
OMS_TranslateTableByteToAA_ (seqan) |
| MRMFeatureQC::ComponentQCs (OpenMS) |
OMS_TranslateTableCharToAA_ (seqan) |
| Compound (OpenMS::TargetedExperimentHelper) |
OMSSACSVFile (OpenMS) |
| SiriusMSFile::CompoundInfo (OpenMS) |
OMSSAXMLFile (OpenMS) |
| MetaboTargetedAssay::CompoundSpectrumPair (OpenMS) |
OnDiscMSExperiment (OpenMS) |
| CompressedInputSource (OpenMS) |
OpenMSBuildInfo (OpenMS::Internal) |
| ConfidenceScoring (OpenMS) |
OpenMSLineEdit (OpenMS::Internal) |
| Configuration (OpenMS::TargetedExperimentHelper) |
OpenMSOSInfo (OpenMS::Internal) |
| ConnectedComponent (OpenMS) |
OpenPepXLAlgorithm (OpenMS) |
| ConsensusFeature (OpenMS) |
OpenPepXLLFAlgorithm (OpenMS) |
| ConsensusIDAlgorithm (OpenMS) |
OpenSwath_Ind_Scores (OpenMS) |
| ConsensusIDAlgorithmAverage (OpenMS) |
OpenSwath_Scores (OpenMS) |
| ConsensusIDAlgorithmBest (OpenMS) |
OpenSwath_Scores_Usage (OpenMS) |
| ConsensusIDAlgorithmIdentity (OpenMS) |
OpenSwathCalibrationWorkflow (OpenMS) |
| ConsensusIDAlgorithmPEPIons (OpenMS) |
OpenSwathDataAccessHelper (OpenMS) |
| ConsensusIDAlgorithmPEPMatrix (OpenMS) |
OpenSwathHelper (OpenMS) |
| ConsensusIDAlgorithmRanks (OpenMS) |
OpenSwathOSWWriter (OpenMS) |
| ConsensusIDAlgorithmSimilarity (OpenMS) |
OpenSwathScoring (OpenMS) |
| ConsensusIDAlgorithmWorst (OpenMS) |
OpenSwathTSVWriter (OpenMS) |
| ConsensusIsotopePattern (OpenMS) |
OpenSwathWorkflow (OpenMS) |
| ConsensusMap (OpenMS) |
OpenSwathWorkflowBase (OpenMS) |
| ConsensusMapMergerAlgorithm (OpenMS) |
OpenSwathWorkflowSonar (OpenMS) |
| ConsensusMapNormalizerAlgorithmMedian (OpenMS) |
MS1FeatureMerger::OPERATOR_FEATURE_TR (OpenMS) |
| ConsensusMapNormalizerAlgorithmQuantile (OpenMS) |
LCMS::OPERATOR_FeatureCompare (OpenMS) |
| ConsensusMapNormalizerAlgorithmThreshold (OpenMS) |
LCMS::OPERATOR_MZ (OpenMS) |
| ConsensusXMLFile (OpenMS) |
OptimizePeakDeconvolution (OpenMS) |
| ConsoleUtils (OpenMS) |
OptimizePick (OpenMS) |
| NASequence::ConstIterator (OpenMS) |
OptimizePick::OptPeakFunctor (OpenMS) |
| HashGrid::ConstIterator (OpenMS) |
OPXLDataStructs (OpenMS) |
| AASequence::ConstIterator (OpenMS) |
OPXLHelper (OpenMS) |
| ConstRefVector (OpenMS) |
OPXLSpectrumProcessingAlgorithms (OpenMS) |
| ConstRefVector::ConstRefVectorConstIterator (OpenMS) |
OSBinaryDataArray (OpenSwath) |
| ConstRefVector::ConstRefVectorIterator (OpenMS) |
OSChromatogram (OpenSwath) |
| Contact (OpenMS::TargetedExperimentHelper) |
OSChromatogramMeta (OpenSwath) |
| ContactPerson (OpenMS) |
OSSpectrum (OpenSwath) |
| ContactPersonVisualizer (OpenMS) |
OSSpectrumMeta (OpenSwath) |
| MSExperiment::ContainerAdd_ (OpenMS) |
OSWFile (OpenMS) |
| MSExperiment::ContainerAdd_< ContainerValueType, false > (OpenMS) |
OutOfGrid (OpenMS::Exception) |
| MSExperiment::ContainerAdd_< ContainerValueType, true > (OpenMS) |
OutOfMemory (OpenMS::Exception) |
| RawMSSignalSimulation::ContaminantInfo (OpenMS) |
OutOfRange (OpenMS::Exception) |
| Contaminants (OpenMS) |
OutputDirectory (OpenMS) |
| Contaminants::ContaminantsSummary (OpenMS) |
|
| ContinuousWaveletTransform (OpenMS) |
| ContinuousWaveletTransformNumIntegration (OpenMS) |
PairComparatorFirstElement (OpenMS) |
| ControlledVocabulary (OpenMS) |
PairComparatorFirstElementMore (OpenMS) |
| ConversionError (OpenMS::Exception) |
PairComparatorSecondElement (OpenMS) |
| ConvexHull2D (OpenMS) |
PairComparatorSecondElementMore (OpenMS) |
| CrossLinksDB (OpenMS) |
PairMatcherFirstElement (OpenMS) |
| OPXLDataStructs::CrossLinkSpectrumMatch (OpenMS) |
PairMatcherSecondElement (OpenMS) |
| CsiFingerIdMzTabWriter::CsiAdapterHit (OpenMS) |
PAM30MS (seqan) |
| CsiFingerIdMzTabWriter::CsiAdapterIdentification (OpenMS) |
Param (OpenMS) |
| CsiFingerIdMzTabWriter::CsiAdapterRun (OpenMS) |
ParamEditor (OpenMS) |
| CsiFingerIdMzTabWriter (OpenMS) |
ParamEditorDelegate (OpenMS::Internal) |
| CsvFile (OpenMS) |
Param::ParamEntry (OpenMS) |
| CSVWriter (OpenSwath) |
ParameterInformation (OpenMS) |
| CubicSpline2d (OpenMS) |
Param::ParamIterator (OpenMS) |
| CV (OpenMS::TargetedExperimentHelper) |
Param::ParamNode (OpenMS) |
| CVMappingFile (OpenMS) |
ParamTree (OpenMS::Internal) |
| CVMappingRule (OpenMS) |
ParamXMLFile (OpenMS) |
| CVMappings (OpenMS) |
ParamXMLHandler (OpenMS::Internal) |
| CVMappingTerm (OpenMS) |
ParentMolecule (OpenMS::IdentificationDataInternal) |
| CVReference (OpenMS) |
ParentMoleculeGroup (OpenMS::IdentificationDataInternal) |
| CVTerm (OpenMS) |
ParentMoleculeGrouping (OpenMS::IdentificationDataInternal) |
| ControlledVocabulary::CVTerm (OpenMS) |
ParentPeakMower (OpenMS) |
| SemanticValidator::CVTerm (OpenMS::Internal) |
ParseError (OpenMS::Exception) |
| CVTermList (OpenMS) |
Pattern< TNeedle, FuzzyAC > (seqan) |
| CVTermListInterface (OpenMS) |
PatternAuxData (seqan) |
|
|
IMSIsotopeDistribution::Peak (OpenMS::ims) |
| Peak1D (OpenMS) |
| EGHFitter1D::Data (OpenMS) |
Peak2D (OpenMS) |
| EmgFitter1D::Data (OpenMS) |
PeakAlignment (OpenMS) |
| OptimizePeakDeconvolution::Data (OpenMS) |
PeptideHit::PeakAnnotation (OpenMS) |
| OptimizePick::Data (OpenMS) |
PeakIntegrator::PeakArea (OpenMS) |
| TwoDOptimization::Data (OpenMS) |
PeakPickerCWT::PeakArea_ (OpenMS) |
| MzIdentMLDOMHandler::DatabaseInput (OpenMS::Internal) |
PeakIntegrator::PeakBackground (OpenMS) |
| DataFilters::DataFilter (OpenMS) |
PeakPickerHiRes::PeakBoundary (OpenMS) |
| DataFilterDialog (OpenMS) |
PeakCandidate (OpenMS) |
| DataFilters (OpenMS) |
PeakPickerMaxima::PeakCandidate (OpenMS) |
| DataMatrix (OpenSwath) |
PeakFileOptions (OpenMS) |
| TransformationModel::DataPoint (OpenMS) |
PeakIndex (OpenMS) |
| DataProcessing (OpenMS) |
PeakIntegrator (OpenMS) |
| DataProcessingSoftware (OpenMS::IdentificationDataInternal) |
PeakIntensityPredictor (OpenMS) |
| DataProcessingStep (OpenMS::IdentificationDataInternal) |
PeakMarker (OpenMS) |
| DataProcessingVisualizer (OpenMS) |
PeakPickerCWT (OpenMS) |
| DataQuery (OpenMS::IdentificationDataInternal) |
PeakPickerHiRes (OpenMS) |
| DataValue (OpenMS) |
PeakPickerIterative (OpenMS) |
| Date (OpenMS) |
PeakPickerMaxima (OpenMS) |
| DateTime (OpenMS) |
PeakPickerMRM (OpenMS) |
| DaTrait (OpenMS) |
PeakPickerSH (OpenMS) |
| DBoundingBox (OpenMS) |
PeakShape (OpenMS) |
| DBSearchParam (OpenMS::IdentificationDataInternal) |
PeakIntegrator::PeakShapeMetrics (OpenMS) |
| MzIdentMLDOMHandler::DBSequence (OpenMS::Internal) |
PeakSpectrumCompareFunctor (OpenMS) |
| DBSuitability (OpenMS) |
PeakTypeEstimator (OpenMS) |
| DeconvPeak (OpenMS) |
PeakWidthEstimator (OpenMS) |
| DecoyGenerator (OpenMS) |
PenaltyFactors (OpenMS::OptimizationFunctions) |
| DecoyHelper (OpenMS) |
PenaltyFactorsIntensity (OpenMS::OptimizationFunctions) |
| DefaultParamHandler (OpenMS) |
PepNovoInfile (OpenMS) |
| Deisotoper (OpenMS) |
PepNovoOutfile (OpenMS) |
| MultiplexDeltaMasses::DeltaMass (OpenMS) |
Peptide (OpenSwath) |
| DeNovoAlgorithm (OpenMS) |
Peptide (OpenMS::TargetedExperimentHelper) |
| DeNovoIdentification (OpenMS) |
PeptideAndProteinQuant (OpenMS) |
| DeNovoIonScoring (OpenMS) |
FeatureFinderIdentificationAlgorithm::PeptideCompare (OpenMS) |
| DeNovoPostScoring (OpenMS) |
PeptideCompound (OpenMS::TargetedExperimentHelper) |
| DepletedIDPool (OpenMS::Exception) |
PeptideAndProteinQuant::PeptideData (OpenMS) |
| SvmTheoreticalSpectrumGenerator::DescriptorSet (OpenMS) |
IDFilter::PeptideDigestionFilter (OpenMS) |
| DetectabilitySimulation (OpenMS) |
ProteinResolver::PeptideEntry (OpenMS) |
| IDBoostGraph::dfs_ccsplit_visitor (OpenMS::Internal) |
PeptideEvidence (OpenMS) |
| DiaPrescore (OpenMS) |
MzIdentMLDOMHandler::PeptideEvidence (OpenMS::Internal) |
| DIAScoring (OpenMS) |
PeptideHit (OpenMS) |
| Digestion (OpenMS) |
PeptideHitVisualizer (OpenMS) |
| DigestionEnzyme (OpenMS) |
PeptideIdentification (OpenMS) |
| DigestionEnzymeDB (OpenMS) |
PeptideIdentificationVisualizer (OpenMS) |
| DigestionEnzymeProtein (OpenMS) |
OPXLHelper::PeptideIDScoreComparator (OpenMS) |
| DigestionEnzymeRNA (OpenMS) |
PeptideIndexing (OpenMS) |
| IDFilter::DigestionFilter (OpenMS) |
PeptideMass (OpenMS) |
| DigestionVisualizer (OpenMS) |
PeptideIndexing::PeptideProteinMatchInformation (OpenMS) |
| DigestSimulation (OpenMS) |
PeptideProteinResolution (OpenMS) |
| DIntervalBase (OpenMS::Internal) |
PeptideHit::PepXMLAnalysisResult (OpenMS) |
| DistanceMatrix (OpenMS) |
PepXMLFile (OpenMS) |
| FeatureDistance::DistanceParams_ (OpenMS) |
PepXMLFileMascot (OpenMS) |
| DivisionByZero (OpenMS::Exception) |
PercolatorFeatureSetHelper (OpenMS) |
| DocumentIdentifier (OpenMS) |
PercolatorOutfile (OpenMS) |
| DocumentIdentifierVisualizer (OpenMS) |
CompNovoIdentificationBase::Permut (OpenMS) |
| DocumentIDTagger (OpenMS) |
PlainMSDataWritingConsumer (OpenMS) |
| ListUtils::DoubleTolerancePredicate_ (OpenMS) |
PointerComparator (OpenMS) |
| DPeak (OpenMS) |
PoseClusteringAffineSuperimposer (OpenMS) |
| DPosition (OpenMS) |
PoseClusteringShiftSuperimposer (OpenMS) |
| DRange (OpenMS) |
ChromatogramPeak::PositionLess (OpenMS) |
| DTA2DFile (OpenMS) |
PeakShape::PositionLess (OpenMS) |
| DTAFile (OpenMS) |
Peak1D::PositionLess (OpenMS) |
|
|
Peak2D::PositionLess (OpenMS) |
| Postcondition (OpenMS::Exception) |
| EDTAFile (OpenMS) |
PosteriorErrorProbabilityModel (OpenMS::Math) |
| EGHFitter1D (OpenMS) |
PpmTrait (OpenMS) |
| EGHFitter1D::EGHFitterFunctor (OpenMS) |
PrecisionWrapper (OpenMS) |
| EGHModel (OpenMS) |
Precondition (OpenMS::Exception) |
| EGHTraceFitter (OpenMS) |
Precursor (OpenMS) |
| EGHTraceFitter::EGHTraceFunctor (OpenMS) |
PrecursorCorrection (OpenMS) |
| EmgFitter1D::EgmFitterFunctor (OpenMS) |
NucleicAcidSearchEngine::PrecursorInfo |
| QTCluster::Element (OpenMS) |
PrecursorIonSelection (OpenMS) |
| Element (OpenMS) |
PrecursorIonSelectionPreprocessing (OpenMS) |
| ElementDB (OpenMS) |
PrecursorMassComparator (OpenMS) |
| ElementNotFound (OpenMS::Exception) |
PrecursorPurity (OpenMS) |
| ElutionModelFitter (OpenMS) |
PrecursorVisualizer (OpenMS) |
| ElutionPeakDetection (OpenMS) |
Prediction (OpenMS::TargetedExperimentHelper) |
| EmgFitter1D (OpenMS) |
SimpleSVM::Prediction (OpenMS) |
| EmgGradientDescent (OpenMS) |
FuzzyStringComparator::PrefixInfo_ (OpenMS) |
| EmgGradientDescent_friend (OpenMS) |
OPXLDataStructs::PreprocessedPairSpectra (OpenMS) |
| EmgModel (OpenMS) |
IDBoostGraph::PrintAddressVisitor (OpenMS::Internal) |
| EmgScoring (OpenMS) |
ProbablePhosphoSites (OpenMS) |
| EmpiricalFormula (OpenMS) |
ProcessData (OpenMS) |
| XMLHandler::EndParsingSoftly (OpenMS::Internal) |
Product (OpenMS) |
| EnhancedTabBar (OpenMS) |
ProductModel (OpenMS) |
| EnhancedTabBarWidgetInterface (OpenMS) |
ProductModel< 2 > (OpenMS) |
| EnhancedWorkspace (OpenMS) |
ReactionMonitoringTransition::ProductMZLess (OpenMS) |
| EnzymaticDigestion (OpenMS) |
ProductVisualizer (OpenMS) |
| EnzymaticDigestionLogModel (OpenMS) |
ProgressLogger (OpenMS) |
| EqualInTolerance (OpenMS) |
ProgressLogger::ProgressLoggerImpl (OpenMS) |
| EuclideanSimilarity (OpenMS) |
ProteaseDB (OpenMS) |
| ExperimentalDesign (OpenMS) |
ProteaseDigestion (OpenMS) |
| ExperimentalDesignFile (OpenMS) |
Protein (OpenSwath) |
| ExperimentalSettings (OpenMS) |
Protein (OpenMS::TargetedExperimentHelper) |
| ExperimentalSettingsVisualizer (OpenMS) |
PeptideAndProteinQuant::ProteinData (OpenMS) |
| ExtendedIsotopeFitter1D (OpenMS) |
ProteinResolver::ProteinEntry (OpenMS) |
| ExtendedIsotopeModel (OpenMS) |
ProteinIdentification::ProteinGroup (OpenMS) |
| ExternalProcess (OpenMS) |
IDBoostGraph::ProteinGroup (OpenMS::Internal) |
| ExternalProcessMBox (OpenMS) |
ProteinHit (OpenMS) |
| ChromatogramExtractorAlgorithm::ExtractionCoordinates (OpenMS) |
ProteinHit::ProteinHitAccessionHash (OpenMS) |
|
|
ProteinHit::ProteinHitPtrAccessionHash (OpenMS) |
| ProteinHitVisualizer (OpenMS) |
| Factory (OpenMS) |
ProteinIdentification (OpenMS) |
| FactoryBase (OpenMS) |
ProteinIdentificationVisualizer (OpenMS) |
| FailedAPICall (OpenMS::Exception) |
ProteinInference (OpenMS) |
| FakeProcess (OpenMS) |
OPXLDataStructs::ProteinProteinCrossLink (OpenMS) |
| FalseDiscoveryRate (OpenMS) |
ProteinResolver (OpenMS) |
| FASTAContainer (OpenMS) |
ProtonDistributionModel (OpenMS) |
| FASTAContainer< TFI_File > (OpenMS) |
ProtXMLFile (OpenMS) |
| FASTAContainer< TFI_Vector > (OpenMS) |
PScore (OpenMS) |
| FASTAFile::FASTAEntry (OpenMS) |
PSLPFormulation (OpenMS) |
| FASTAFile (OpenMS) |
PSProteinInference (OpenMS) |
| Feature (OpenMS) |
PTMXMLFile (OpenMS) |
| FeatureFinderIdentificationAlgorithm::FeatureCompare (OpenMS) |
PTMXMLHandler (OpenMS::Internal) |
| AbsoluteQuantitationStandards::featureConcentration (OpenMS) |
Publication (OpenMS::TargetedExperimentHelper) |
| FeatureDeconvolution (OpenMS) |
IsobaricChannelExtractor::PuritySate_ (OpenMS) |
| FeatureDistance (OpenMS) |
PrecursorPurity::PurityScores (OpenMS) |
| FeatureEditDialog (OpenMS) |
PythonInfo (OpenMS) |
| FeatureFileOptions (OpenMS) |
PythonModuleRequirement (OpenMS::Internal) |
| FeatureFinderIdentificationAlgorithm::FeatureFilterPeptides (OpenMS) |
PythonSelector (OpenMS::Internal) |
| FeatureFinderIdentificationAlgorithm::FeatureFilterQuality (OpenMS) |
|
| FeatureFinder (OpenMS) |
| FeatureFinderAlgorithm (OpenMS) |
QApplication |
| FeatureFinderAlgorithmIsotopeWavelet (OpenMS) |
QApplicationTOPP (OpenMS) |
| FeatureFinderAlgorithmMRM (OpenMS) |
QCBase (OpenMS) |
| FeatureFinderAlgorithmPicked (OpenMS) |
QcMLFile (OpenMS) |
| FeatureFinderAlgorithmPickedHelperStructs (OpenMS) |
QDate |
| FeatureFinderAlgorithmSH (OpenMS) |
QDateTime |
| FeatureFinderAlgorithmSHCtrl (OpenMS) |
QDialog |
| FeatureFinderDefs (OpenMS) |
QFileSystemWatcher |
| FeatureFinderIdentificationAlgorithm (OpenMS) |
QGraphicsItem |
| FeatureFinderMultiplexAlgorithm (OpenMS) |
QGraphicsScene |
| FeatureFindingMetabo (OpenMS) |
QGraphicsView |
| FeatureGroupingAlgorithm (OpenMS) |
QItemDelegate |
| FeatureGroupingAlgorithmKD (OpenMS) |
QLineEdit |
| FeatureGroupingAlgorithmLabeled (OpenMS) |
QListWidget |
| FeatureGroupingAlgorithmQT (OpenMS) |
QMainWindow |
| FeatureGroupingAlgorithmUnlabeled (OpenMS) |
QMdiArea |
| FeatureHandle (OpenMS) |
QObject |
| FeatureHandle::FeatureHandleMutable_ (OpenMS) |
QOpenGLFunctions_2_0 |
| FeatureHypothesis (OpenMS) |
QOpenGLWidget |
| FeatureLCProfile (OpenMS) |
QProcess |
| FeatureMap (OpenMS) |
QTabBar |
| FeatureMapping (OpenMS) |
QTabWidget |
| FeatureOpenMS (OpenMS) |
QTCluster (OpenMS) |
| FeatureMapping::FeatureToMs2Indices (OpenMS) |
QTClusterFinder (OpenMS) |
| FeatureXMLFile (OpenMS) |
QTextEdit |
| IsotopeWavelet::fi_ (OpenMS) |
QTreeWidget |
| FIAMSDataProcessor (OpenMS) |
QuadraticRegression (OpenMS::Math) |
| FIAMSScheduler (OpenMS) |
BaseFeature::QualityLess (OpenMS) |
| FidHandler (OpenMS::Internal) |
QcMLFile::QualityParameter (OpenMS) |
| File (OpenMS) |
QuantitativeExperimentalDesign (OpenMS) |
| FileEmpty (OpenMS::Exception) |
QueryMatchGroup (OpenMS::IdentificationDataInternal) |
| FileHandler (OpenMS) |
QWidget |
| FileMapping (OpenMS::Internal) |
|
| FileNameTooLong (OpenMS::Exception) |
| FileNotFound (OpenMS::Exception) |
RAIICleanup (OpenMS) |
| FileNotReadable (OpenMS::Exception) |
Range (OpenMS) |
| FileNotWritable (OpenMS::Exception) |
RangeManager (OpenMS) |
| FileTypes (OpenMS) |
PeptideHit::RankLess (OpenMS) |
| FileWatcher (OpenMS) |
RANSAC (OpenMS::Math) |
| FilterFunctor (OpenMS) |
RansacModel (OpenMS::Math) |
| FilterList (OpenMS::Internal) |
RansacModelLinear (OpenMS::Math) |
| FineIsotopePatternGenerator (OpenMS) |
RansacModelQuadratic (OpenMS::Math) |
| Fitter1D (OpenMS) |
RANSACParam (OpenMS::Math) |
| FloatDataArray (OpenMS::DataArrays) |
ConsensusFeature::Ratio (OpenMS) |
| FragmentMassError::FMEStatistics (OpenMS) |
RawData (OpenMS) |
| PeptideIndexing::FoundProteinFunctor (OpenMS) |
RawMSSignalSimulation (OpenMS) |
| RNPxlFragmentAnnotationHelper::FragmentAnnotationDetail_ (OpenMS::Internal) |
RawTandemMSSignalSimulation (OpenMS) |
| FragmentMassError (OpenMS) |
ReactionMonitoringTransition (OpenMS) |
| FTPeakDetectController (OpenMS) |
StringUtils::real_policies_NANfixed_ (OpenMS) |
| FullSwathFileConsumer (OpenMS) |
RealMassDecomposer (OpenMS::ims) |
| GumbelMaxLikelihoodFitter::Functor (OpenMS::Math) |
RegularSwathFileConsumer (OpenMS) |
| FuzzyStringComparator (OpenMS) |
Base64::Reinterpreter32_ (OpenMS) |
| FWHM (OpenMS) |
Base64::Reinterpreter64_ (OpenMS) |
|
|
RequiredParameterNotGiven (OpenMS::Exception) |
| Residue (OpenMS) |
| GammaDistributionFitter::GammaDistributionFitResult (OpenMS::Math) |
ResidueDB (OpenMS) |
| GammaDistributionFitter (OpenMS::Math) |
ResidueModification (OpenMS) |
| GaussFilter (OpenMS) |
ProteinResolver::ResolverResult (OpenMS) |
| GaussFilterAlgorithm (OpenMS) |
DecoyHelper::Result (OpenMS) |
| GaussFitter::GaussFitResult (OpenMS::Math) |
MorpheusScore::Result (OpenMS) |
| GaussFitter (OpenMS::Math) |
RetentionTime (OpenMS::TargetedExperimentHelper) |
| GaussFitter1D (OpenMS) |
ReverseComparator (OpenMS) |
| SignalToNoiseEstimator::GaussianEstimate (OpenMS) |
Ribonucleotide (OpenMS) |
| GaussModel (OpenMS) |
RibonucleotideDB (OpenMS) |
| GaussTraceFitter (OpenMS) |
RichPeak2D (OpenMS) |
| GaussTraceFitter::GaussTraceFunctor (OpenMS) |
RNaseDB (OpenMS) |
| LevMarqFitter1D::GenericFunctor (OpenMS) |
RNaseDigestion (OpenMS) |
| TraceFitter::GenericFunctor (OpenMS) |
RNPxlFragmentAnnotationHelper (OpenMS::Internal) |
| IDFilter::GetMatchingItems (OpenMS) |
RNPxlMarkerIonExtractor (OpenMS) |
| IDBoostGraph::GetPosteriorVisitor (OpenMS::Internal) |
RNPxlModificationMassesResult (OpenMS) |
| ConfidenceScoring::GLM_ (OpenMS) |
RNPxlModificationsGenerator (OpenMS) |
| GlobalExceptionHandler (OpenMS::Exception) |
RNPxlReport (OpenMS) |
| glp_prob |
RNPxlReportRow (OpenMS) |
| GoodDiffFilter (OpenMS) |
RNPxlReportRowHeader (OpenMS) |
| Gradient (OpenMS) |
ROCCurve (OpenMS::Math) |
| GradientVisualizer (OpenMS) |
MzTabNucleicAcidSectionRow::RowCompare (OpenMS) |
| GridBasedCluster (OpenMS) |
MzTabOligonucleotideSectionRow::RowCompare (OpenMS) |
| GridBasedClustering (OpenMS) |
MzTabPSMSectionRow::RowCompare (OpenMS) |
| GridFeature (OpenMS) |
MzTabProteinSectionRow::RowCompare (OpenMS) |
| GridSearch (OpenMS) |
MzTabPeptideSectionRow::RowCompare (OpenMS) |
| GUIHelpers (OpenMS) |
MzTabOSMSectionRow::RowCompare (OpenMS) |
| GUILock (OpenMS::Internal) |
RTAlignment (OpenMS) |
| GUIProgressLoggerImpl (OpenMS) |
ChromatogramPeak::RTLess (OpenMS) |
| GumbelDistributionFitter::GumbelDistributionFitResult (OpenMS::Math) |
MSSpectrum::RTLess (OpenMS) |
| GumbelMaxLikelihoodFitter::GumbelDistributionFitResult (OpenMS::Math) |
Peak2D::RTLess (OpenMS) |
| GumbelDistributionFitter (OpenMS::Math) |
MZTrafoModel::RTLess (OpenMS) |
| GumbelMaxLikelihoodFitter::GumbelDistributionFunctor (OpenMS::Math) |
OSSpectrumMeta::RTLess (OpenSwath) |
| GumbelMaxLikelihoodFitter (OpenMS::Math) |
ConfidenceScoring::RTNorm_ (OpenMS) |
| GzipIfstream (OpenMS) |
FeatureFinderIdentificationAlgorithm::RTRegion (OpenMS) |
| GzipInputStream (OpenMS) |
RTSimulation (OpenMS) |
|
|
AbsoluteQuantitationStandards::runConcentration (OpenMS) |
| RWrapper (OpenMS) |
| HasActivationMethod (OpenMS) |
|
| IDFilter::HasDecoyAnnotation (OpenMS) |
| IDFilter::HasGoodScore (OpenMS) |
Sample (OpenMS) |
| hash< OpenMS::String > (std) |
ExperimentalDesign::SampleSection (OpenMS) |
| HashGrid (OpenMS) |
SampleTreatment (OpenMS) |
| NucleicAcidSearchEngine::HasInvalidLength |
SampleVisualizer (OpenMS) |
| IDFilter::HasMatchingAccession (OpenMS) |
SaveImageDialog (OpenMS) |
| IDFilter::HasMatchingAccessionUnordered (OpenMS) |
SavitzkyGolayFilter (OpenMS) |
| IDFilter::HasMaxMetaValue (OpenMS) |
Scaler (OpenMS) |
| IDFilter::HasMaxRank (OpenMS) |
Ms2SpectrumStats::ScanEvent (OpenMS) |
| HasMetaValue (OpenMS) |
PSLPFormulation::ScanLess (OpenMS) |
| IDFilter::HasMetaValue (OpenMS) |
ScanWindow (OpenMS) |
| IDFilter::HasNoHits (OpenMS) |
ScanWindowVisualizer (OpenMS) |
| HasPrecursorCharge (OpenMS) |
ScoredProcessingResult (OpenMS::IdentificationDataInternal) |
| HasScanMode (OpenMS) |
PeptideHit::ScoreLess (OpenMS) |
| HasScanPolarity (OpenMS) |
ProteinHit::ScoreLess (OpenMS) |
| HDF5Connector (OpenMS) |
ProteinHit::ScoreMore (OpenMS) |
| HiddenMarkovModel (OpenMS) |
PeptideHit::ScoreMore (OpenMS) |
| Histogram (OpenMS::Math) |
ScoreToTgtDecLabelPairs (OpenMS) |
| HistogramDialog (OpenMS) |
ScoreType (OpenMS::IdentificationDataInternal) |
| HistogramWidget (OpenMS) |
ScoringMatrixData_< int, AminoAcid, AdaptedIdentity > (seqan) |
| ConsensusIDAlgorithm::HitInfo (OpenMS) |
ScoringMatrixData_< int, AminoAcid, PAM30MS > (seqan) |
| HMMState (OpenMS) |
ProteinIdentification::SearchParameters (OpenMS) |
| Host< Pattern< TNeedle, FuzzyAC > > (seqan) |
FeatureFinderAlgorithmPickedHelperStructs::Seed (OpenMS) |
| Host< Pattern< TNeedle, FuzzyAC > const > (seqan) |
SeedListGenerator (OpenMS) |
| HPLC (OpenMS) |
MRMFeatureSelector::SelectorParameters (OpenMS) |
| HPLCVisualizer (OpenMS) |
SemanticValidator (OpenMS::Internal) |
| HyperScore (OpenMS) |
PrecursorIonSelection::SeqTotalScoreMore (OpenMS) |
|
|
PeptideHit::SequenceLessComparator (OpenMS) |
| SequestInfile (OpenMS) |
| IBSpectraFile (OpenMS) |
SequestOutfile (OpenMS) |
| IChromatogramsReader (OpenMS::Interfaces) |
IDBoostGraph::SetPosteriorVisitor (OpenMS::Internal) |
| IChromatogramsWriter (OpenMS::Interfaces) |
SHFeature (OpenMS) |
| ICPLLabeler (OpenMS) |
SignalToNoiseEstimator (OpenMS) |
| IDataFrameWriter (OpenSwath) |
SignalToNoiseEstimatorMeanIterative (OpenMS) |
| IDBoostGraph (OpenMS::Internal) |
SignalToNoiseEstimatorMedian (OpenMS) |
| IDConflictResolverAlgorithm (OpenMS) |
SignalToNoiseEstimatorMedianRapid (OpenMS) |
| IDDecoyProbability (OpenMS) |
SignalToNoiseOpenMS (OpenMS) |
| Identification (OpenMS) |
SILACLabeler (OpenMS) |
| IdentificationData (OpenMS) |
SimpleOpenMSSpectraFactory (OpenMS) |
| IdentificationDataConverter (OpenMS) |
SimplePairFinder (OpenMS) |
| IdentificationHit (OpenMS) |
SimpleTSGXLMS::SimplePeak (OpenMS) |
| Ms2IdentificationRate::IdentificationRateData (OpenMS) |
SimpleTSGXLMS::SimplePeakComparator (OpenMS) |
| IdentifiedCompound (OpenMS::IdentificationDataInternal) |
SimpleSearchEngineAlgorithm (OpenMS) |
| IdentifiedSequence (OpenMS::IdentificationDataInternal) |
SimpleSVM (OpenMS) |
| IDFilter (OpenMS) |
SimpleTSGXLMS (OpenMS) |
| IDMapper (OpenMS) |
SimProtein (OpenMS::SimTypes) |
| IDMergerAlgorithm (OpenMS) |
SimRandomNumberGenerator (OpenMS::SimTypes) |
| MzTab::IDMzTabStream (OpenMS) |
ROCCurve::simsortdec (OpenMS::Math) |
| IDRipper (OpenMS) |
SingleLinkage (OpenMS) |
| IDScoreGetterSetter (OpenMS) |
SingletonRegistry (OpenMS) |
| IDScoreSwitcherAlgorithm (OpenMS) |
SiriusAdapterAlgorithm (OpenMS) |
| IdXMLFile (OpenMS) |
SiriusMzTabWriter::SiriusAdapterHit (OpenMS) |
| InclusionExclusionList::IEWindow (OpenMS) |
SiriusMzTabWriter::SiriusAdapterIdentification (OpenMS) |
| IFeature (OpenSwath) |
SiriusMzTabWriter::SiriusAdapterRun (OpenMS) |
| IllegalArgument (OpenMS::Exception) |
SiriusFragmentAnnotation (OpenMS) |
| Map::IllegalKey (OpenMS) |
SiriusMSFile (OpenMS) |
| IllegalPosition (OpenMS::Exception) |
SiriusMzTabWriter (OpenMS) |
| IllegalSelfOperation (OpenMS::Exception) |
SiriusAdapterAlgorithm::SiriusTemporaryFileSystemObjects (OpenMS) |
| IllegalTreeOperation (OpenMS::Exception) |
ConsensusFeature::SizeLess (OpenMS) |
| ILPDCWrapper (OpenMS) |
SizeUnderflow (OpenMS::Exception) |
| IMRMFeature (OpenSwath) |
Software (OpenMS) |
| IMSAlphabet (OpenMS::ims) |
SoftwareVisualizer (OpenMS) |
| IMSAlphabetParser (OpenMS::ims) |
LPWrapper::SolverParam (OpenMS) |
| IMSAlphabetTextParser (OpenMS::ims) |
SONARScoring (OpenMS) |
| IMSDataConsumer (OpenMS::Interfaces) |
SourceFile (OpenMS) |
| IMSElement (OpenMS::ims) |
SourceFileVisualizer (OpenMS) |
| IMSIsotopeDistribution (OpenMS::ims) |
Spawn (seqan) |
| IncludeExcludeTarget (OpenMS) |
SpecArrayFile (OpenMS) |
| InclusionExclusionList (OpenMS) |
SpectraMerger::SpectraDistance_ (OpenMS) |
| IncompatibleIterators (OpenMS::Exception) |
IDMapper::SpectraIdentificationState (OpenMS) |
| IndexedMzMLDecoder (OpenMS) |
SpectraIdentificationViewWidget (OpenMS) |
| IndexedMzMLFileLoader (OpenMS) |
SpectralMatch (OpenMS) |
| IndexedMzMLHandler (OpenMS::Internal) |
SpectralMatchScoreComparator (OpenMS) |
| FeatureHandle::IndexLess (OpenMS) |
QCBase::SpectraMap (OpenMS) |
| PSLPFormulation::IndexLess (OpenMS) |
SpectraMerger (OpenMS) |
| IndexOverflow (OpenMS::Exception) |
SpectraSTSimilarityScore (OpenMS) |
| PSLPFormulation::IndexTriple (OpenMS) |
SpectraViewWidget (OpenMS) |
| IndexUnderflow (OpenMS::Exception) |
Spectrum (OpenMS::Interfaces) |
| INIFileEditorWindow (OpenMS) |
Spectrum1DCanvas (OpenMS) |
| InIntensityRange (OpenMS) |
Spectrum1DGoToDialog (OpenMS) |
| INIUpdater (OpenMS) |
Spectrum1DPrefDialog (OpenMS::Internal) |
| InMSLevelRange (OpenMS) |
Spectrum1DWidget (OpenMS) |
| InMzRange (OpenMS) |
Spectrum2DCanvas (OpenMS) |
| InPrecursorMZRange (OpenMS) |
Spectrum2DGoToDialog (OpenMS) |
| InputFile (OpenMS) |
Spectrum2DPrefDialog (OpenMS::Internal) |
| InputFileList (OpenMS::Internal) |
Spectrum2DWidget (OpenMS) |
| FuzzyStringComparator::InputLine (OpenMS) |
Spectrum3DCanvas (OpenMS) |
| InRTRange (OpenMS) |
Spectrum3DOpenGLCanvas (OpenMS) |
| InspectInfile (OpenMS) |
Spectrum3DPrefDialog (OpenMS::Internal) |
| InspectOutfile (OpenMS) |
Spectrum3DWidget (OpenMS) |
| Instrument (OpenMS) |
SpectrumAccessOpenMS (OpenMS) |
| Instrument (OpenMS::TargetedExperimentHelper) |
SpectrumAccessOpenMSCached (OpenMS) |
| InstrumentSettings (OpenMS) |
SpectrumAccessOpenMSInMemory (OpenMS) |
| InstrumentSettingsVisualizer (OpenMS) |
SpectrumAccessQuadMZTransforming (OpenMS) |
| InstrumentVisualizer (OpenMS) |
SpectrumAccessSqMass (OpenMS) |
| ClusterFunctor::InsufficientInput (OpenMS) |
SpectrumAccessTransforming (OpenMS) |
| IntegerDataArray (OpenMS::DataArrays) |
SpectrumAddition (OpenMS) |
| IntegerMassDecomposer (OpenMS::ims) |
SpectrumAlignment (OpenMS) |
| IntensityBalanceFilter (OpenMS) |
SpectrumAlignmentDialog (OpenMS) |
| IntensityIteratorWrapper (OpenMS::Internal) |
SpectrumAlignmentScore (OpenMS) |
| ChromatogramPeak::IntensityLess (OpenMS) |
SpectrumAnnotator (OpenMS) |
| Peak1D::IntensityLess (OpenMS) |
SpectrumCanvas (OpenMS) |
| Peak2D::IntensityLess (OpenMS) |
SpectrumCheapDPCorr (OpenMS) |
| InternalCalibration (OpenMS) |
MzXMLHandler::SpectrumData (OpenMS::Internal) |
| InterpolationModel (OpenMS) |
MzMLHandler::SpectrumData (OpenMS::Internal) |
| TransformationModelInterpolated::Interpolator (OpenMS) |
MzIdentMLDOMHandler::SpectrumIdentification (OpenMS::Internal) |
| Interpretation (OpenMS::TargetedExperimentHelper) |
SpectrumIdentification (OpenMS) |
| InvalidIterator (OpenMS::Exception) |
MzIdentMLDOMHandler::SpectrumIdentificationProtocol (OpenMS::Internal) |
| InvalidParameter (OpenMS::Exception) |
SpectrumLookup (OpenMS) |
| InvalidRange (OpenMS::Exception) |
SpectrumMeta (OpenMS::Interfaces) |
| InvalidSize (OpenMS::Exception) |
SpectrumMetaDataLookup::SpectrumMetaData (OpenMS) |
| InvalidValue (OpenMS::Exception) |
SpectrumMetaDataLookup (OpenMS) |
| IOException (OpenMS::Exception) |
SpectrumPrecursorComparator (OpenMS) |
| TOPPASToolVertex::IOInfo (OpenMS) |
SpectrumSettings (OpenMS) |
| IonDetector (OpenMS) |
SpectrumSettingsVisualizer (OpenMS) |
| IonDetectorVisualizer (OpenMS) |
SpectrumWidget (OpenMS) |
| IonizationSimulation (OpenMS) |
SplineInterpolatedPeaks (OpenMS) |
| IonMobilityScoring (OpenMS) |
SplinePackage (OpenMS) |
| CompNovoIonScoringBase::IonScore (OpenMS) |
SqliteConnector (OpenMS) |
| DeNovoIonScoring::IonScore (OpenMS) |
SqMassFile::SqMassConfig (OpenMS) |
| IonSource (OpenMS) |
SqMassFile (OpenMS) |
| IonSourceVisualizer (OpenMS) |
SqrtMower (OpenMS) |
| SvmTheoreticalSpectrumGenerator::IonType (OpenMS) |
squared_difference (KDTree) |
| ProteinResolver::ISDGroup (OpenMS) |
squared_difference_counted (KDTree) |
| IsEmptySpectrum (OpenMS) |
StablePairFinder (OpenMS) |
| IDScoreGetterSetter::IsHitType (OpenMS) |
PeptideAndProteinQuant::Statistics (OpenMS) |
| IDScoreGetterSetter::IsIDType (OpenMS) |
QCBase::Status (OpenMS) |
| ISignalToNoise (OpenSwath) |
SteinScottImproveScore (OpenMS) |
| IsInCollisionEnergyRange (OpenMS) |
StopWatch (OpenMS) |
| IsInIsolationWindow (OpenMS) |
FuzzyStringComparator::StreamElement_ (OpenMS) |
| IsInIsolationWindowSizeRange (OpenMS) |
StreamHandler (OpenMS) |
| IsobaricChannelExtractor (OpenMS) |
LogStreamBuf::StreamStruct (OpenMS::Logger) |
| IsobaricQuantitationMethod::IsobaricChannelInformation (OpenMS) |
String (OpenMS) |
| IsobaricIsotopeCorrector (OpenMS) |
StringDataArray (OpenMS::DataArrays) |
| IsobaricNormalizer (OpenMS) |
StringListUtils (OpenMS) |
| IsobaricQuantifier (OpenMS) |
StringManager (OpenMS::Internal) |
| IsobaricQuantifierStatistics (OpenMS) |
StringUtils (OpenMS) |
| IsobaricQuantitationMethod (OpenMS) |
StringView (OpenMS) |
| IsoSpecGeneratorWrapper (OpenMS) |
DBSuitability::SuitabilityData (OpenMS) |
| IsoSpecOrderedGeneratorWrapper (OpenMS) |
Summary (OpenMS) |
| IsoSpecThresholdGeneratorWrapper (OpenMS) |
SummaryStatistics (OpenMS::Math) |
| IsoSpecThresholdWrapper (OpenMS) |
TargetedExperiment::SummaryStatistics (OpenMS) |
| IsoSpecTotalProbGeneratorWrapper (OpenMS) |
SuperHirnParameters (OpenMS) |
| IsoSpecTotalProbWrapper (OpenMS) |
SuperHirnUtil (OpenMS) |
| IsoSpecWrapper (OpenMS) |
SVMData (OpenMS) |
| IsotopeCluster (OpenMS) |
SvmTheoreticalSpectrumGenerator::SvmModelParameterSet (OpenMS) |
| IsotopeDiffFilter (OpenMS) |
SvmTheoreticalSpectrumGenerator (OpenMS) |
| IsotopeDistribution (OpenMS) |
SvmTheoreticalSpectrumGeneratorSet (OpenMS) |
| IsotopeDistributionCache (OpenMS) |
SvmTheoreticalSpectrumGeneratorTrainer (OpenMS) |
| IsotopeFitter1D (OpenMS) |
SVMWrapper (OpenMS) |
| IsotopeMarker (OpenMS) |
SVOutStream (OpenMS) |
| IsotopeModel (OpenMS) |
SwathFile (OpenMS) |
| FeatureFinderAlgorithmPickedHelperStructs::IsotopePattern (OpenMS) |
SwathLibraryStats (OpenMS) |
| IsotopePatternGenerator (OpenMS) |
SwathMap (OpenSwath) |
| IsotopeWavelet (OpenMS) |
SwathMapMassCorrection (OpenMS) |
| IsotopeWaveletTransform (OpenMS) |
SwathQC (OpenSwath) |
| IsotopicDist (OpenMS) |
SwathTabWidget (OpenMS::Internal) |
| ISpectraReader (OpenMS::Interfaces) |
SwathWindowLoader (OpenMS) |
| ISpectraWriter (OpenMS::Interfaces) |
SwathWizardBase (OpenMS) |
| ISpectrumAccess (OpenSwath) |
SysInfo (OpenMS) |
| IsZoomSpectrum (OpenMS) |
|
| HashGrid::Iterator (OpenMS) |
| NASequence::Iterator (OpenMS) |
Tagger (OpenMS) |
| AASequence::Iterator (OpenMS) |
Tagging (OpenMS) |
| IteratorWrapper (OpenMS::IdentificationDataInternal) |
TaggingVisualizer (OpenMS) |
| ITransitionGroup (OpenSwath) |
TargetedExperiment (OpenMS) |
| ItraqConstants (OpenMS) |
TargetedExperiment (OpenSwath) |
| ItraqEightPlexQuantitationMethod (OpenMS) |
TargetedSpectraExtractor (OpenMS) |
| ItraqFourPlexQuantitationMethod (OpenMS) |
File::TempDir (OpenMS) |
| ITRAQLabeler (OpenMS) |
File::TemporaryFiles_ (OpenMS) |
|
|
TextFile (OpenMS) |
| FeatureFinderAlgorithmPickedHelperStructs::TheoreticalIsotopePattern (OpenMS) |
| JavaInfo (OpenMS) |
TheoreticalSpectrumGenerationDialog (OpenMS) |
|
|
TheoreticalSpectrumGenerator (OpenMS) |
| TheoreticalSpectrumGeneratorXLMS (OpenMS) |
| KDTree (KDTree) |
ThresholdMower (OpenMS) |
| KDTreeFeatureMaps (OpenMS) |
TIC (OpenMS) |
| KDTreeFeatureNode (OpenMS) |
TICFilter (OpenMS) |
| KroenikFile (OpenMS) |
StopWatch::TimeDiff_ (OpenMS) |
|
|
TMTElevenPlexQuantitationMethod (OpenMS) |
| TMTSixPlexQuantitationMethod (OpenMS) |
| MultiplexDeltaMassesGenerator::Label (OpenMS) |
TMTSixteenPlexQuantitationMethod (OpenMS) |
| LabeledPairFinder (OpenMS) |
TMTTenPlexQuantitationMethod (OpenMS) |
| LabelFreeLabeler (OpenMS) |
TOFCalibration (OpenMS) |
| IDBoostGraph::LabelVisitor (OpenMS::Internal) |
ToolDescription (OpenMS::Internal) |
| LayerData (OpenMS) |
ToolDescriptionFile (OpenMS) |
| LayerStatisticsDialog (OpenMS) |
ToolDescriptionHandler (OpenMS::Internal) |
| LCElutionPeak (OpenMS) |
ToolDescriptionInternal (OpenMS::Internal) |
| LCMS (OpenMS) |
ToolExternalDetails (OpenMS::Internal) |
| LCMSCData (OpenMS) |
ToolHandler (OpenMS) |
| LevMarqFitter1D (OpenMS) |
ToolsDialog (OpenMS) |
| LexicographicComparator (OpenMS) |
TOPPASBase (OpenMS) |
| LibSVMEncoder (OpenMS) |
TOPPASEdge (OpenMS) |
| LightCompound (OpenSwath) |
TOPPASVertex::TOPPASFilenames (OpenMS) |
| LightModification (OpenSwath) |
TOPPASInputFileDialog (OpenMS) |
| LightProtein (OpenSwath) |
TOPPASInputFileListVertex (OpenMS) |
| LightTargetedExperiment (OpenSwath) |
TOPPASInputFilesDialog (OpenMS) |
| LightTransition (OpenSwath) |
TOPPASIOMappingDialog (OpenMS) |
| LinearInterpolation (OpenMS::Math) |
TOPPASLogWindow (OpenMS) |
| LinearRegression (OpenMS::Math) |
TOPPASMergerVertex (OpenMS) |
| LinearRegressionWithoutIntercept (OpenMS::Math) |
TOPPASOutputFileListVertex (OpenMS) |
| LinearResampler (OpenMS) |
TOPPASOutputFilesDialog (OpenMS) |
| LinearResamplerAlign (OpenMS) |
TOPPASResource (OpenMS) |
| ListEditor (OpenMS) |
TOPPASResources (OpenMS) |
| ListEditorDelegate (OpenMS::Internal) |
TOPPASScene (OpenMS) |
| ListTable (OpenMS::Internal) |
TOPPASSplitterVertex (OpenMS) |
| ListUtils (OpenMS) |
TOPPASTabBar (OpenMS) |
| LocalLinearMap::LLMParam (OpenMS) |
TOPPASToolConfigDialog (OpenMS) |
| LocalLinearMap (OpenMS) |
TOPPASToolVertex (OpenMS) |
| InternalCalibration::LockMass (OpenMS) |
TOPPASTreeView (OpenMS) |
| LogStreamBuf::LogCacheStruct (OpenMS::Logger) |
TOPPASVertex (OpenMS) |
| LogConfigHandler (OpenMS) |
TOPPASVertexNameDialog (OpenMS) |
| LogStream (OpenMS::Logger) |
TOPPASWidget (OpenMS) |
| LogStreamBuf (OpenMS::Logger) |
TOPPBase (OpenMS) |
| LogStreamNotifier (OpenMS::Logger) |
TOPPGNPSExport |
| SimpleTSGXLMS::LossIndex (OpenMS) |
TOPPOpenSwathBase (OpenMS) |
| TheoreticalSpectrumGeneratorXLMS::LossIndex (OpenMS) |
TOPPASScene::TOPPProcess (OpenMS) |
| LowessSmoothing (OpenMS) |
TOPPViewBase (OpenMS) |
| LPWrapper (OpenMS) |
TOPPViewIdentificationViewBehavior (OpenMS) |
| PercolatorFeatureSetHelper::lq_PeptideEvidence (OpenMS) |
TOPPViewOpenDialog (OpenMS) |
| PercolatorFeatureSetHelper::lq_ProteinHit (OpenMS) |
TOPPViewPrefDialog (OpenMS::Internal) |
|
|
TOPPViewSpectraViewBehavior (OpenMS) |
| PrecursorIonSelection::TotalScoreMore (OpenMS) |
| Map (OpenMS) |
TraceFitter (OpenMS) |
| MapAlignmentAlgorithmIdentification (OpenMS) |
Param::ParamIterator::TraceInfo (OpenMS) |
| MapAlignmentAlgorithmKD (OpenMS) |
TraMLFile (OpenMS) |
| MapAlignmentAlgorithmPoseClustering (OpenMS) |
TraMLHandler (OpenMS::Internal) |
| MapAlignmentAlgorithmSpectrumAlignment (OpenMS) |
TraMLProduct (OpenMS::TargetedExperimentHelper) |
| MapAlignmentAlgorithmTreeGuided (OpenMS) |
TraMLValidator (OpenMS::Internal) |
| MapAlignmentEvaluationAlgorithm (OpenMS) |
IDDecoyProbability::Transformation_ (OpenMS) |
| MapAlignmentEvaluationAlgorithmPrecision (OpenMS) |
TransformationDescription (OpenMS) |
| MapAlignmentEvaluationAlgorithmRecall (OpenMS) |
TransformationModel (OpenMS) |
| MapAlignmentTransformer (OpenMS) |
TransformationModelBSpline (OpenMS) |
| MapConversion (OpenMS) |
TransformationModelInterpolated (OpenMS) |
| ProteinIdentification::Mapping (OpenMS) |
TransformationModelLinear (OpenMS) |
| AccurateMassSearchEngine::MappingEntry_ (OpenMS) |
TransformationModelLowess (OpenMS) |
| MappingParam (OpenMS::Internal) |
TransformationDescription::TransformationStatistics (OpenMS) |
| ConsensusFeature::MapsLess (OpenMS) |
TransformationXMLFile (OpenMS) |
| ModifiedPeptideGenerator::MapToResidueType (OpenMS) |
TransitionGroupOpenMS (OpenMS) |
| MapUtilities (OpenMS) |
TransitionHelper (OpenSwath) |
| MarkerMower (OpenMS) |
TransitionPQPFile (OpenMS) |
| MascotGenericFile (OpenMS) |
TransitionTSVFile (OpenMS) |
| MascotInfile (OpenMS) |
IsotopeWaveletTransform::TransSpectrum (OpenMS) |
| MascotRemoteQuery (OpenMS) |
TransitionTSVFile::TSVTransition (OpenMS) |
| MascotXMLFile (OpenMS) |
TwoDOptimization::TwoDOptFunctor (OpenMS) |
| MascotXMLHandler (OpenMS::Internal) |
TwoDOptimization (OpenMS) |
| MassAnalyzer (OpenMS) |
|
| MassAnalyzerVisualizer (OpenMS) |
| MassDecomposer (OpenMS::ims) |
UnableToCalibrate (OpenMS::Exception) |
| MassDecomposition (OpenMS) |
UnableToCreateFile (OpenMS::Exception) |
| MassDecompositionAlgorithm (OpenMS) |
UnableToFit (OpenMS::Exception) |
| MassExplainer (OpenMS) |
UnimodXMLFile (OpenMS) |
| IMSAlphabet::MassSortingCriteria_ (OpenMS::ims) |
UnimodXMLHandler (OpenMS::Internal) |
| MassTrace (OpenMS) |
UniqueIdGenerator (OpenMS) |
| FeatureFinderAlgorithmPickedHelperStructs::MassTrace (OpenMS) |
UniqueIdIndexer (OpenMS) |
| MasstraceCorrelator (OpenMS) |
UniqueIdInterface (OpenMS) |
| MassTraceDetection (OpenMS) |
CVTerm::Unit (OpenMS) |
| FeatureFinderAlgorithmPickedHelperStructs::MassTraces (OpenMS) |
UnnormalizedComparator (OpenMS) |
| TargetedSpectraExtractor::Match (OpenMS) |
UnregisteredParameter (OpenMS::Exception) |
| MatchedIterator (OpenMS) |
UpdateCheck (OpenMS) |
| Matrix (OpenMS) |
|
| MaxLikeliFitter1D (OpenMS) |
| mean_and_stddev (OpenSwath) |
ValueSize< AAcid > (seqan) |
| SysInfo::MemUsage (OpenMS) |
ValueTrait (OpenMS) |
| MessagePasserFactory (OpenMS::Internal) |
PSLPFormulation::VariableIndexLess (OpenMS) |
| MetaboliteFeatureDeconvolution (OpenMS) |
VecLowPrecision (OpenMS) |
| MetaboliteSpectralMatching (OpenMS) |
VersionInfo::VersionDetails (OpenMS) |
| MetaboTargetedAssay (OpenMS) |
VersionInfo (OpenMS) |
| MetaDataBrowser (OpenMS) |
TOPPASVertex::VertexRoundPackage (OpenMS) |
| MetaInfo (OpenMS) |
|
| MetaInfoDescription (OpenMS) |
| MetaInfoDescriptionVisualizer (OpenMS) |
Weights (OpenMS::ims) |
| MetaInfoInterface (OpenMS) |
WeightWrapper (OpenMS) |
| MetaInfoInterfaceUtils (OpenMS) |
InclusionExclusionList::WindowDistance_ (OpenMS) |
| MetaInfoRegistry (OpenMS) |
WindowMower (OpenMS) |
| MetaInfoVisualizer (OpenMS) |
WrongParameterType (OpenMS::Exception) |
| LayerStatisticsDialog::MetaStatsValue_ (OpenMS) |
|
| MinimumDistance (OpenMS) |
| MissedCleavages (OpenMS) |
XCorrArrayType (OpenSwath::Scoring) |
| MissingInformation (OpenMS::Exception) |
XFDRAlgorithm (OpenMS) |
| MockFeature (OpenSwath) |
OPXLDataStructs::XLPrecursor (OpenMS) |
| MockMRMFeature (OpenSwath) |
OPXLDataStructs::XLPrecursorComparator (OpenMS) |
| MockSignalToNoise (OpenSwath) |
XMassFile (OpenMS) |
| MockTransitionGroup (OpenSwath) |
XMLFile (OpenMS::Internal) |
| TraceFitter::ModelData (OpenMS) |
XMLHandler (OpenMS::Internal) |
| ModelDescription (OpenMS) |
XMLValidator (OpenMS) |
| Modification (OpenMS) |
XQuestResultXMLFile (OpenMS) |
| Peptide::Modification (OpenMS::TargetedExperimentHelper) |
XQuestResultXMLHandler (OpenMS::Internal) |
| ModificationDefinition (OpenMS) |
XQuestScores (OpenMS) |
| ModificationDefinitionsSet (OpenMS) |
XTandemInfile (OpenMS) |
| MzIdentMLDOMHandler::ModificationParam (OpenMS::Internal) |
XTandemXMLFile (OpenMS) |
| ModificationsDB (OpenMS) |
|
| ModificationVisualizer (OpenMS) |
| ModifiedNASequenceGenerator (OpenMS) |
ZhangSimilarityScore (OpenMS) |
| ModifiedPeptideGenerator (OpenMS) |
ZlibCompression (OpenMS) |
| IdentificationData::ModifyMultiIndexAddProcessingStep (OpenMS) |
|
| |
1.8.16
