MS2ConsensusSpectrum Class Reference

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2ConsensusSpectrum.h>

Inheritance diagram for MS2ConsensusSpectrum:

Collaboration diagram for MS2ConsensusSpectrum:

Public Member Functions
	~MS2ConsensusSpectrum ()
	MS2ConsensusSpectrum ()
	MS2ConsensusSpectrum (MS2Fragment *)
	MS2ConsensusSpectrum (double iPrecursorMZ, double iTR, int iChrg, int iApexScan)
	MS2ConsensusSpectrum (const MS2ConsensusSpectrum &)
	MS2ConsensusSpectrum (const MS2ConsensusSpectrum *)
MS2ConsensusSpectrum &	operator= (const MS2ConsensusSpectrum &)
bool	operator== (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator<= (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator>= (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator< (const MS2ConsensusSpectrum &)
MS2ConsensusSpectrum &	operator> (const MS2ConsensusSpectrum &)
double	getLCElutionPeakSimilarity (MS2Fragment *)
void	addMS2Fragment (MS2Fragment *)
void	computeMS2SpectrumParameters ()
void	show_info ()
MS2Fragment *	findMS2Fragment (double)
double	getPrecursorMZ ()
double	getTR ()
double	getStartTR ()
double	getEndTR ()
void	setPrecursorChrg (int in)
int	getPrecursorChrg ()
int	getApexScan ()
int	getStartScan ()
int	getEndScan ()
int	getNbMS2Fragments ()
std::multimap< double, MS2Fragment >::iterator	getMS2FragmentPeakStart ()
std::multimap< double, MS2Fragment >::iterator	getMS2FragmentPeakEnd ()
std::multimap< double, MS2Fragment > *	getMS2FragmentMap ()

Public Attributes
double	precursorMZ
double	TR

Static Public Attributes
static double	MS2_MZ_TOLERANCE

Protected Attributes
double	startTR
double	endTR
int	z
int	apexScan
int	startScan
int	endScan

Private Attributes
std::multimap< double, MS2Fragment >	MS2FragmentPeaks

Constructor & Destructor Documentation

~MS2ConsensusSpectrum()

~MS2ConsensusSpectrum

(

)

MS2ConsensusSpectrum() [1/5]

MS2ConsensusSpectrum

(

)

MS2ConsensusSpectrum() [2/5]

MS2ConsensusSpectrum

(

MS2Fragment *

)

MS2ConsensusSpectrum() [3/5]

MS2ConsensusSpectrum	(	double	iPrecursorMZ,
		double	iTR,
		int	iChrg,
		int	iApexScan
	)

MS2ConsensusSpectrum() [4/5]

MS2ConsensusSpectrum

(

const MS2ConsensusSpectrum &

)

MS2ConsensusSpectrum() [5/5]

MS2ConsensusSpectrum

(

const MS2ConsensusSpectrum *

)

Member Function Documentation

addMS2Fragment()

void addMS2Fragment

(

MS2Fragment *

)

computeMS2SpectrumParameters()

void computeMS2SpectrumParameters

(

)

findMS2Fragment()

MS2Fragment* findMS2Fragment

(

double

)

getApexScan()

int getApexScan

(

)

getEndScan()

int getEndScan

(

)

getEndTR()

double getEndTR

(

)

getLCElutionPeakSimilarity()

double getLCElutionPeakSimilarity

(

MS2Fragment *

)

getMS2FragmentMap()

std::multimap<double, MS2Fragment>* getMS2FragmentMap

(

)

getMS2FragmentPeakEnd()

std::multimap<double, MS2Fragment>::iterator getMS2FragmentPeakEnd

(

)

getMS2FragmentPeakStart()

std::multimap<double, MS2Fragment>::iterator getMS2FragmentPeakStart

(

)

getNbMS2Fragments()

int getNbMS2Fragments

(

)

getPrecursorChrg()

int getPrecursorChrg

(

)

getPrecursorMZ()

double getPrecursorMZ

(

)

getStartScan()

int getStartScan

(

)

getStartTR()

double getStartTR

(

)

getTR()

double getTR

(

)

operator<()

MS2ConsensusSpectrum& operator<

(

const MS2ConsensusSpectrum &

)

operator<=()

MS2ConsensusSpectrum& operator<=

(

const MS2ConsensusSpectrum &

)

operator=()

MS2ConsensusSpectrum& operator=

(

const MS2ConsensusSpectrum &

)

operator==()

bool operator==

(

const MS2ConsensusSpectrum &

)

operator>()

MS2ConsensusSpectrum& operator>

(

const MS2ConsensusSpectrum &

)

operator>=()

MS2ConsensusSpectrum& operator>=

(

const MS2ConsensusSpectrum &

)

setPrecursorChrg()

void setPrecursorChrg

(

int

in

)

show_info()

void show_info

(

)

Member Data Documentation

apexScan

int apexScan

protected

endScan

int endScan

protected

endTR

double endTR

protected

MS2_MZ_TOLERANCE

double MS2_MZ_TOLERANCE

static

MS2FragmentPeaks

std::multimap<double, MS2Fragment> MS2FragmentPeaks

private

precursorMZ

double precursorMZ

startScan

int startScan

protected

startTR

double startTR

protected

TR

double TR

z

int z

protected