OpenMS
2.6.0
|
Scoring of an spectrum using SONAR data. More...
#include <OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h>
Constructors and Destructor | |
double | dia_extract_window_ |
bool | dia_centroided_ |
bool | dia_extraction_ppm_ |
SONARScoring () | |
Default constructor. More... | |
~SONARScoring () override | |
Destructor. More... | |
void | computeSonarScores (OpenSwath::IMRMFeature *imrmfeature, const std::vector< OpenSwath::LightTransition > &transitions, const std::vector< OpenSwath::SwathMap > &swath_maps, OpenSwath_Scores &scores) |
void | computeXCorr_ (std::vector< std::vector< double > > &sonar_profiles, double &xcorr_coelution_score, double &xcorr_shape_score) |
SONARScoring (const SONARScoring &rhs) | |
Copy constructor (algorithm class) More... | |
SONARScoring & | operator= (const SONARScoring &rhs) |
Assignment operator (algorithm class) More... | |
void | updateMembers_ () override |
Synchronize members with param class. More... | |
Additional Inherited Members | |
Public Member Functions inherited from DefaultParamHandler | |
DefaultParamHandler (const String &name) | |
Constructor with name that is displayed in error messages. More... | |
DefaultParamHandler (const DefaultParamHandler &rhs) | |
Copy constructor. More... | |
virtual | ~DefaultParamHandler () |
Destructor. More... | |
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
Assignment operator. More... | |
virtual bool | operator== (const DefaultParamHandler &rhs) const |
Equality operator. More... | |
void | setParameters (const Param ¶m) |
Sets the parameters. More... | |
const Param & | getParameters () const |
Non-mutable access to the parameters. More... | |
const Param & | getDefaults () const |
Non-mutable access to the default parameters. More... | |
const String & | getName () const |
Non-mutable access to the name. More... | |
void | setName (const String &name) |
Mutable access to the name. More... | |
const std::vector< String > & | getSubsections () const |
Non-mutable access to the registered subsections. More... | |
Static Public Member Functions inherited from DefaultParamHandler | |
static void | writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") |
Writes all parameters to meta values. More... | |
Protected Member Functions inherited from DefaultParamHandler | |
void | defaultsToParam_ () |
Updates the parameters after the defaults have been set in the constructor. More... | |
Protected Attributes inherited from DefaultParamHandler | |
Param | param_ |
Container for current parameters. More... | |
Param | defaults_ |
Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
std::vector< String > | subsections_ |
Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
String | error_name_ |
Name that is displayed in error messages during the parameter checking. More... | |
bool | check_defaults_ |
If this member is set to false no checking if parameters in done;. More... | |
bool | warn_empty_defaults_ |
If this member is set to false no warning is emitted when defaults are empty;. More... | |
Scoring of an spectrum using SONAR data.
SONARScoring | ( | ) |
Default constructor.
|
inlineoverride |
Destructor.
|
private |
Copy constructor (algorithm class)
void computeSonarScores | ( | OpenSwath::IMRMFeature * | imrmfeature, |
const std::vector< OpenSwath::LightTransition > & | transitions, | ||
const std::vector< OpenSwath::SwathMap > & | swath_maps, | ||
OpenSwath_Scores & | scores | ||
) |
|
private |
|
private |
Assignment operator (algorithm class)
|
overrideprivatevirtual |
Synchronize members with param class.
Reimplemented from DefaultParamHandler.
|
private |
|
private |
|
private |