PeptideIndexing::FoundProteinFunctor Struct Reference

#include <OpenMS/ANALYSIS/ID/PeptideIndexing.h>

Collaboration diagram for PeptideIndexing::FoundProteinFunctor:

Public Types
typedef std::map< OpenMS::Size, std::set< PeptideProteinMatchInformation > >	MapType

Public Member Functions
	FoundProteinFunctor (const ProteaseDigestion &enzyme, bool xtandem)
void	merge (FoundProteinFunctor &other)
void	addHit (const OpenMS::Size idx_pep, const OpenMS::Size idx_prot, const OpenMS::Size len_pep, const OpenMS::String &seq_prot, OpenMS::Int position)

Public Attributes
MapType	pep_to_prot
OpenMS::Size	filter_passed
OpenMS::Size	filter_rejected

Private Attributes
ProteaseDigestion	enzyme_
bool	xtandem_

Member Typedef Documentation

MapType

typedef std::map<OpenMS::Size, std::set<PeptideProteinMatchInformation> > MapType

Constructor & Destructor Documentation

FoundProteinFunctor()

FoundProteinFunctor ( const ProteaseDigestion &  enzyme, bool  xtandem  )

inlineexplicit

Member Function Documentation

addHit()

void addHit ( const OpenMS::Size  idx_pep, const OpenMS::Size  idx_prot, const OpenMS::Size  len_pep, const OpenMS::String &  seq_prot, OpenMS::Int  position  )

inline

References PeptideEvidence::C_TERMINAL_AA, ProteaseDigestion::isValidProduct(), PeptideEvidence::N_TERMINAL_AA, and seqan::position().

Referenced by PeptideIndexing::addHits_().

merge()

void merge ( FoundProteinFunctor &  other )

inline

References PeptideIndexing::FoundProteinFunctor::filter_passed, PeptideIndexing::FoundProteinFunctor::filter_rejected, and PeptideIndexing::FoundProteinFunctor::pep_to_prot.

Referenced by PeptideIndexing::run().

Member Data Documentation

enzyme_

ProteaseDigestion enzyme_

private

filter_passed

OpenMS::Size filter_passed

Referenced by PeptideIndexing::FoundProteinFunctor::merge(), and PeptideIndexing::run().

filter_rejected

OpenMS::Size filter_rejected

Referenced by PeptideIndexing::FoundProteinFunctor::merge(), and PeptideIndexing::run().

pep_to_prot

MapType pep_to_prot

Referenced by PeptideIndexing::FoundProteinFunctor::merge(), and PeptideIndexing::run().

xtandem_

bool xtandem_

private