OpenMS
2.6.0
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WindowMower augments the highest peaks in a sliding or jumping window. More...
#include <OpenMS/FILTERING/TRANSFORMERS/WindowMower.h>
Public Member Functions | |
WindowMower () | |
default constructor More... | |
~WindowMower () override | |
destructor More... | |
WindowMower (const WindowMower &source) | |
copy constructor More... | |
WindowMower & | operator= (const WindowMower &source) |
assignment operator More... | |
template<typename SpectrumType > | |
void | filterPeakSpectrumForTopNInSlidingWindow (SpectrumType &spectrum) |
sliding window version (slower) More... | |
void | filterPeakSpectrum (PeakSpectrum &spectrum) |
void | filterPeakMap (PeakMap &exp) |
template<typename SpectrumType > | |
void | filterPeakSpectrumForTopNInJumpingWindow (SpectrumType &spectrum) |
Public Member Functions inherited from DefaultParamHandler | |
DefaultParamHandler (const String &name) | |
Constructor with name that is displayed in error messages. More... | |
DefaultParamHandler (const DefaultParamHandler &rhs) | |
Copy constructor. More... | |
virtual | ~DefaultParamHandler () |
Destructor. More... | |
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
Assignment operator. More... | |
virtual bool | operator== (const DefaultParamHandler &rhs) const |
Equality operator. More... | |
void | setParameters (const Param ¶m) |
Sets the parameters. More... | |
const Param & | getParameters () const |
Non-mutable access to the parameters. More... | |
const Param & | getDefaults () const |
Non-mutable access to the default parameters. More... | |
const String & | getName () const |
Non-mutable access to the name. More... | |
void | setName (const String &name) |
Mutable access to the name. More... | |
const std::vector< String > & | getSubsections () const |
Non-mutable access to the registered subsections. More... | |
Private Attributes | |
double | windowsize_ |
UInt | peakcount_ |
Additional Inherited Members | |
Static Public Member Functions inherited from DefaultParamHandler | |
static void | writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &prefix="") |
Writes all parameters to meta values. More... | |
Protected Member Functions inherited from DefaultParamHandler | |
virtual void | updateMembers_ () |
This method is used to update extra member variables at the end of the setParameters() method. More... | |
void | defaultsToParam_ () |
Updates the parameters after the defaults have been set in the constructor. More... | |
Protected Attributes inherited from DefaultParamHandler | |
Param | param_ |
Container for current parameters. More... | |
Param | defaults_ |
Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
std::vector< String > | subsections_ |
Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
String | error_name_ |
Name that is displayed in error messages during the parameter checking. More... | |
bool | check_defaults_ |
If this member is set to false no checking if parameters in done;. More... | |
bool | warn_empty_defaults_ |
If this member is set to false no warning is emitted when defaults are empty;. More... | |
WindowMower augments the highest peaks in a sliding or jumping window.
Parameters of this class are:Name | Type | Default | Restrictions | Description |
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windowsize | float | 50.0 | The size of the sliding window along the m/z axis. | |
peakcount | int | 2 | The number of peaks that should be kept. | |
movetype | string | slide | slide, jump | Whether sliding window (one peak steps) or jumping window (window size steps) should be used. |
WindowMower | ( | ) |
default constructor
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override |
destructor
WindowMower | ( | const WindowMower & | source | ) |
copy constructor
void filterPeakMap | ( | PeakMap & | exp | ) |
void filterPeakSpectrum | ( | PeakSpectrum & | spectrum | ) |
Referenced by NucleicAcidSearchEngine::preprocessSpectra_().
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inline |
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inline |
sliding window version (slower)
References MSSpectrum::select(), MSSpectrum::sortByIntensity(), and MSSpectrum::sortByPosition().
WindowMower& operator= | ( | const WindowMower & | source | ) |
assignment operator
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private |
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private |