OpenMS
2.6.0
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Algorithms of ConsensusMapNormalizer. More...
#include <OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.h>
Public Types | |
enum | NormalizationMethod { NM_SCALE, NM_SHIFT } |
The NormalizationMethod enum Whether to scale to same median using division/multiplication or shift using subtraction/addition. More... | |
Public Member Functions | |
ConsensusMapNormalizerAlgorithmMedian () | |
default constructor is not implemented -> private More... | |
virtual | ~ConsensusMapNormalizerAlgorithmMedian () |
destructor is not implemented -> private More... | |
Static Public Member Functions | |
static void | normalizeMaps (ConsensusMap &map, NormalizationMethod method, const String &acc_filter, const String &desc_filter) |
normalizes the maps of the consensusMap More... | |
static Size | computeMedians (const ConsensusMap &map, std::vector< double > &medians, const String &acc_filter, const String &desc_filter) |
computes medians of all maps and returns index of map with most features More... | |
static bool | passesFilters_ (ConsensusMap::ConstIterator cf_it, const ConsensusMap &map, const String &acc_filter, const String &desc_filter) |
returns whether consensus feature passes filters returns whether consensus feature cf_it in map passes accession regexp acc_filter and description regexp desc_filter More... | |
Private Member Functions | |
ConsensusMapNormalizerAlgorithmMedian (const ConsensusMapNormalizerAlgorithmMedian ©in) | |
copy constructor is not implemented -> private More... | |
ConsensusMapNormalizerAlgorithmMedian & | operator= (const ConsensusMapNormalizerAlgorithmMedian &rhs) |
assignment operator is not implemented -> private More... | |
Friends | |
class | ConsensusMapNormalizerAlgorithmThreshold |
our friend can use our passesWhitelist_() method in order to avoid code duplication (without overdesigning this) More... | |
Algorithms of ConsensusMapNormalizer.
enum NormalizationMethod |
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private |
copy constructor is not implemented -> private
default constructor is not implemented -> private
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virtual |
destructor is not implemented -> private
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static |
computes medians of all maps and returns index of map with most features
map | ConsensusMap |
medians | vector of medians to be filled |
acc_filter | string describing the regular expression for filtering accessions |
desc_filter | string describing the regular expression for filtering descriptions |
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static |
normalizes the maps of the consensusMap
map | ConsensusMap |
method | whether to use scaling or shifting to same median |
acc_filter | string describing the regular expression for filtering accessions |
desc_filter | string describing the regular expression for filtering descriptions |
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private |
assignment operator is not implemented -> private
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static |
returns whether consensus feature passes filters returns whether consensus feature cf_it
in map
passes accession regexp acc_filter
and description regexp desc_filter
cf_it | consensus feature |
map | consensus map |
acc_filter | string describing the regular expression for filtering accessions |
desc_filter | string describing the regular expression for filtering descriptions |
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friend |
our friend can use our passesWhitelist_() method in order to avoid code duplication (without overdesigning this)