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enum | QUANT_TYPES { MS1LABEL = 0,
MS2LABEL,
LABELFREE,
SIZE_OF_QUANT_TYPES
} |
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typedef CVTermList | ParamGroupList |
| typedef docu More...
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static const std::string | NamesOfQuantTypes [SIZE_OF_QUANT_TYPES] |
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AnalysisSummary | analysis_summary_ |
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std::vector< MetaInfo > | bibliographic_reference_ |
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std::vector< ConsensusMap > | consensus_maps_ |
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std::vector< FeatureMap > | feature_maps_ |
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std::vector< Assay > | assays_ |
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std::vector< DataProcessing > | data_processings_ |
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| MSQuantifications ()=default |
| Constructor. More...
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| MSQuantifications (FeatureMap fm, ExperimentalSettings &es, std::vector< DataProcessing > &dps, std::vector< std::vector< std::pair< String, double > > > labels=(std::vector< std::vector< std::pair< String, double > > >())) |
| Detailed Constructor. More...
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| MSQuantifications (const MSQuantifications &source)=default |
| Copy constructor. More...
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| MSQuantifications (MSQuantifications &&)=default |
| Move constructor. More...
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| ~MSQuantifications () override |
| Destructor. More...
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MSQuantifications & | operator= (const MSQuantifications &source)=default |
| Assignment operator. More...
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MSQuantifications & | operator= (MSQuantifications &&) &=default |
| Move assignment operator. More...
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bool | operator== (const MSQuantifications &rhs) const |
| Equality operator. More...
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bool | operator!= (const MSQuantifications &rhs) const |
| Equality operator. More...
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const std::vector< DataProcessing > | getDataProcessingList () const |
| Loads data from a text file. More...
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const std::vector< Assay > & | getAssays () const |
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std::vector< Assay > & | getAssays () |
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const std::vector< ConsensusMap > & | getConsensusMaps () const |
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std::vector< ConsensusMap > & | getConsensusMaps () |
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void | setConsensusMaps (const std::vector< ConsensusMap > &) |
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const std::vector< FeatureMap > & | getFeatureMaps () const |
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const AnalysisSummary & | getAnalysisSummary () const |
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AnalysisSummary & | getAnalysisSummary () |
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void | setDataProcessingList (std::vector< DataProcessing > &dpl) |
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void | setAnalysisSummaryQuantType (QUANT_TYPES r) |
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void | addConsensusMap (ConsensusMap &m) |
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void | assignUIDs () |
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void | registerExperiment (PeakMap &exp, std::vector< std::vector< std::pair< String, double > > > labels) |
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void | registerExperiment (ExperimentalSettings &es, std::vector< DataProcessing > &dp, std::vector< std::vector< std::pair< String, double > > > labels=(std::vector< std::vector< std::pair< String, double > > >())) |
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| ExperimentalSettings ()=default |
| Constructor. More...
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| ExperimentalSettings (const ExperimentalSettings &)=default |
| Copy constructor. More...
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| ExperimentalSettings (ExperimentalSettings &&)=default |
| Move constructor. More...
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| ~ExperimentalSettings () override |
| Destructor. More...
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ExperimentalSettings & | operator= (const ExperimentalSettings &)=default |
| Assignment operator. More...
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ExperimentalSettings & | operator= (ExperimentalSettings &&) &=default |
| Move assignment operator. More...
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bool | operator== (const ExperimentalSettings &rhs) const |
| Equality operator. More...
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bool | operator!= (const ExperimentalSettings &rhs) const |
| Equality operator. More...
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const Sample & | getSample () const |
| returns a const reference to the sample description More...
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Sample & | getSample () |
| returns a mutable reference to the sample description More...
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void | setSample (const Sample &sample) |
| sets the sample description More...
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const std::vector< SourceFile > & | getSourceFiles () const |
| returns a const reference to the source data file More...
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std::vector< SourceFile > & | getSourceFiles () |
| returns a mutable reference to the source data file More...
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void | setSourceFiles (const std::vector< SourceFile > &source_files) |
| sets the source data file More...
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const std::vector< ContactPerson > & | getContacts () const |
| returns a const reference to the list of contact persons More...
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std::vector< ContactPerson > & | getContacts () |
| returns a mutable reference to the list of contact persons More...
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void | setContacts (const std::vector< ContactPerson > &contacts) |
| sets the list of contact persons More...
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const Instrument & | getInstrument () const |
| returns a const reference to the MS instrument description More...
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Instrument & | getInstrument () |
| returns a mutable reference to the MS instrument description More...
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void | setInstrument (const Instrument &instrument) |
| sets the MS instrument description More...
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const HPLC & | getHPLC () const |
| returns a const reference to the description of the HPLC run More...
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HPLC & | getHPLC () |
| returns a mutable reference to the description of the HPLC run More...
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void | setHPLC (const HPLC &hplc) |
| sets the description of the HPLC run More...
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const DateTime & | getDateTime () const |
| returns the date the experiment was performed More...
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void | setDateTime (const DateTime &date) |
| sets the date the experiment was performed More...
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const String & | getComment () const |
| returns the free-text comment More...
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void | setComment (const String &comment) |
| sets the free-text comment More...
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const std::vector< ProteinIdentification > & | getProteinIdentifications () const |
| returns a const reference to the protein ProteinIdentification vector More...
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std::vector< ProteinIdentification > & | getProteinIdentifications () |
| returns a mutable reference to the protein ProteinIdentification vector More...
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void | setProteinIdentifications (const std::vector< ProteinIdentification > &protein_identifications) |
| sets the protein ProteinIdentification vector More...
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const String & | getFractionIdentifier () const |
| returns fraction identifier More...
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void | setFractionIdentifier (const String &fraction_identifier) |
| sets the fraction identifier More...
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| MetaInfoInterface () |
| Constructor. More...
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| MetaInfoInterface (const MetaInfoInterface &rhs) |
| Copy constructor. More...
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| MetaInfoInterface (MetaInfoInterface &&) noexcept |
| Move constructor. More...
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| ~MetaInfoInterface () |
| Destructor. More...
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MetaInfoInterface & | operator= (const MetaInfoInterface &rhs) |
| Assignment operator. More...
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MetaInfoInterface & | operator= (MetaInfoInterface &&) noexcept |
| Move assignment operator. More...
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bool | operator== (const MetaInfoInterface &rhs) const |
| Equality operator. More...
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bool | operator!= (const MetaInfoInterface &rhs) const |
| Equality operator. More...
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const DataValue & | getMetaValue (const String &name, const DataValue &default_value=DataValue::EMPTY) const |
| Returns the value corresponding to a string, or a default value (default: DataValue::EMPTY) if not found. More...
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const DataValue & | getMetaValue (UInt index, const DataValue &default_value=DataValue::EMPTY) const |
| Returns the value corresponding to an index, or a default value (default: DataValue::EMPTY) if not found. More...
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bool | metaValueExists (const String &name) const |
| Returns whether an entry with the given name exists. More...
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bool | metaValueExists (UInt index) const |
| Returns whether an entry with the given index exists. More...
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void | setMetaValue (const String &name, const DataValue &value) |
| Sets the DataValue corresponding to a name. More...
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void | setMetaValue (UInt index, const DataValue &value) |
| Sets the DataValue corresponding to an index. More...
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void | removeMetaValue (const String &name) |
| Removes the DataValue corresponding to name if it exists. More...
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void | removeMetaValue (UInt index) |
| Removes the DataValue corresponding to index if it exists. More...
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void | addMetaValues (const MetaInfoInterface &from) |
| function to copy all meta values from one object to this one More...
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void | getKeys (std::vector< String > &keys) const |
| Fills the given vector with a list of all keys for which a value is set. More...
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void | getKeys (std::vector< UInt > &keys) const |
| Fills the given vector with a list of all keys for which a value is set. More...
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bool | isMetaEmpty () const |
| Returns if the MetaInfo is empty. More...
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void | clearMetaInfo () |
| Removes all meta values. More...
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| DocumentIdentifier () |
| Default constructor. More...
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| DocumentIdentifier (const DocumentIdentifier &)=default |
| Copy constructor. More...
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| DocumentIdentifier (DocumentIdentifier &&)=default |
| Move constructor. More...
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virtual | ~DocumentIdentifier () |
| Destructor. More...
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DocumentIdentifier & | operator= (const DocumentIdentifier &)=default |
| Assignment operator. More...
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DocumentIdentifier & | operator= (DocumentIdentifier &&) &=default |
| Move assignment operator. More...
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bool | operator== (const DocumentIdentifier &rhs) const |
| Equality operator. More...
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void | setIdentifier (const String &id) |
| set document identifier (e.g. an LSID) More...
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const String & | getIdentifier () const |
| retrieve document identifier (e.g. an LSID) More...
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void | swap (DocumentIdentifier &from) |
| exchange content with from More...
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void | setLoadedFilePath (const String &file_name) |
| set the file_name_ according to absolute path of the file loaded from preferably done whilst loading More...
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const String & | getLoadedFilePath () const |
| get the file_name_ which is the absolute path to the file loaded from More...
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void | setLoadedFileType (const String &file_name) |
| set the file_type according to the type of the file loaded from (see FileHandler::Type) preferably done whilst loading More...
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const FileTypes::Type & | getLoadedFileType () const |
| get the file_type (e.g. featureXML, consensusXML, mzData, mzXML, mzML, ...) of the file loaded from More...
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static MetaInfoRegistry & | metaRegistry () |
| Returns a reference to the MetaInfoRegistry. More...
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void | createIfNotExists_ () |
| Creates the MetaInfo object if it does not exist. More...
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Sample | sample_ |
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std::vector< SourceFile > | source_files_ |
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std::vector< ContactPerson > | contacts_ |
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Instrument | instrument_ |
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HPLC | hplc_ |
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DateTime | datetime_ |
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String | comment_ |
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std::vector< ProteinIdentification > | protein_identifications_ |
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String | fraction_identifier_ |
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MetaInfo * | meta_ |
| Pointer to the MetaInfo object (0 by default) More...
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String | id_ |
| the ID (e.g. LSID) More...
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String | file_path_ |
| the path to the loaded file More...
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FileTypes::Type | file_type_ |
| the type of the loaded file More...
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