OpenMS
2.6.0
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#include <OpenMS/QC/TIC.h>
Public Member Functions | |
TIC ()=default | |
Constructor. More... | |
virtual | ~TIC ()=default |
Destructor. More... | |
void | clear () |
void | compute (const MSExperiment &exp, float bin_size=0) |
Compute Total Ion Count and applies the resampling algorithm, if a bin size in RT seconds greater than 0 is given. More... | |
const String & | getName () const override |
Returns the name of the metric. More... | |
const std::vector< MSChromatogram > & | getResults () const |
QCBase::Status | requires () const override |
Returns the input data requirements of the compute(...) function. More... | |
void | addMetaDataMetricsToMzTab (MzTabMetaData &meta) |
append QC data for given metrics to mzTab's MTD section More... | |
Public Member Functions inherited from QCBase | |
bool | isRunnable (const Status &s) const |
Private Attributes | |
const String | name_ = "TIC" |
std::vector< MSChromatogram > | results_ |
Additional Inherited Members | |
Public Types inherited from QCBase | |
enum | Requires : UInt64 { NOTHING, RAWMZML, POSTFDRFEAT, PREFDRFEAT, CONTAMINANTS, TRAFOALIGN, SIZE_OF_REQUIRES } |
Enum to encode a file type as a bit. More... | |
Static Public Member Functions inherited from QCBase | |
static bool | isLabeledExperiment (const ConsensusMap &cm) |
check if the IsobaricAnalyzer TOPP tool was used to create this ConsensusMap More... | |
template<typename MAP > | |
static bool | hasPepID (const MAP &fmap) |
does the container have a PeptideIdentification in its members or as unassignedPepID ? More... | |
Static Public Attributes inherited from QCBase | |
static const std::string | names_of_requires [] |
strings corresponding to enum Requires More... | |
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default |
Constructor.
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virtualdefault |
Destructor.
void addMetaDataMetricsToMzTab | ( | MzTabMetaData & | meta | ) |
append QC data for given metrics to mzTab's MTD section
void clear | ( | ) |
void compute | ( | const MSExperiment & | exp, |
float | bin_size = 0 |
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Compute Total Ion Count and applies the resampling algorithm, if a bin size in RT seconds greater than 0 is given.
All MS1 TICs within a bin are summed up.
exp | Peak map to compute the MS1 tick from |
bin_size | RT bin size in seconds |
const std::vector<MSChromatogram>& getResults | ( | ) | const |
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overridevirtual |
Returns the input data requirements of the compute(...) function.
Implements QCBase.
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private |
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private |