ExperimentalDesignFile Class Reference

Load an experimental design from a TSV file. (see ExperimentalDesign for details on the supported format) More...

#include <OpenMS/FORMAT/ExperimentalDesignFile.h>

Static Public Member Functions
static ExperimentalDesign	load (const String &tsv_file, bool require_spectra_files)
	Loads an experimental design from a tabular separated file. More...

Static Private Member Functions
static bool	isOneTableFile_ (const TextFile &text_file)
static ExperimentalDesign	parseOneTableFile_ (const TextFile &text_file, const String &tsv_file, bool require_spectra_file)
static ExperimentalDesign	parseTwoTableFile_ (const TextFile &text_file, const String &tsv_file, bool require_spectra_file)
static void	parseHeader_ (const StringList &header, const String &filename, std::map< String, Size > &column_map, const std::set< String > &required, const std::set< String > &optional, bool allow_other_header)

Detailed Description

Load an experimental design from a TSV file. (see ExperimentalDesign for details on the supported format)

Member Function Documentation

isOneTableFile_()

static bool isOneTableFile_ ( const TextFile &  text_file )

staticprivate

load()

static ExperimentalDesign load ( const String &  tsv_file, bool  require_spectra_files  )

static

Loads an experimental design from a tabular separated file.

parseHeader_()

static void parseHeader_ ( const StringList &  header, const String &  filename, std::map< String, Size > &  column_map, const std::set< String > &  required, const std::set< String > &  optional, bool  allow_other_header  )

staticprivate

Reads header line of File and Sample section, checks for the existence of required headers and maps the column name to its position

parseOneTableFile_()

static ExperimentalDesign parseOneTableFile_ ( const TextFile &  text_file, const String &  tsv_file, bool  require_spectra_file  )

staticprivate

parseTwoTableFile_()

static ExperimentalDesign parseTwoTableFile_ ( const TextFile &  text_file, const String &  tsv_file, bool  require_spectra_file  )

staticprivate