The class template is only implemented for D=2 because we use Peak2D here. More...

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h>

Inheritance diagram for ProductModel< 2 >:

Collaboration diagram for ProductModel< 2 >:

Public Types
enum	{ D = 2 }
	Number of dimensions. More...

typedef double	IntensityType

typedef DPosition< D >	PositionType

typedef BaseModel< D >::SamplesType	SamplesType

Public Types inherited from BaseModel< 2 >
typedef double	IntensityType

typedef double	CoordinateType

typedef DPosition< D >	PositionType

typedef DPeak< D >::Type	PeakType

typedef std::vector< PeakType >	SamplesType

Public Member Functions
	ProductModel ()
	Default constructor. More...

	ProductModel (const ProductModel &source)
	copy constructor More...

	~ProductModel () override
	destructor More...

virtual ProductModel &	operator= (const ProductModel &source)
	assignment operator More...

IntensityType	getIntensity (const PositionType &pos) const override
	intensity equals product of intensities in each dimension More...

ProductModel &	setModel (UInt dim, BaseModel< 1 > *dist)
	set model `dist` for dimension `dim` More...

BaseModel< 1 > *	getModel (UInt dim) const

IntensityType	getScale () const
	return the intensity scaling factor More...

void	setScale (IntensityType scale)
	set the intensity scaling factor More...

void	getSamples (SamplesType &cont) const override
	get reasonable set of samples from the model (i.e. for printing) More...

Public Member Functions inherited from BaseModel< 2 >
	BaseModel ()
	Default constructor. More...

	BaseModel (const BaseModel &source)
	copy constructor More...

	~BaseModel () override
	Destructor. More...

virtual BaseModel &	operator= (const BaseModel &source)
	assignment operator More...

void	registerChildren ()

void	registerChildren ()

virtual bool	isContained (const PositionType &pos) const
	check if position `pos` is part of the model regarding the models cut-off. More...

void	fillIntensity (PeakType &peak) const
	Convenience function to set the intensity of a peak to the predicted intensity at its current position, calling virtual void getIntensity(). More...

void	fillIntensities (PeakIterator begin, PeakIterator end) const
	Convenience function that applies fillIntensity() to an iterator range. More...

virtual IntensityType	getCutOff () const
	get cutoff value More...

virtual void	setCutOff (IntensityType cut_off)
	set cutoff value More...

virtual void	getSamples (std::ostream &os)
	fill stream with reasonable set of samples from the model (i.e. for printing) More...

Public Member Functions inherited from DefaultParamHandler
	DefaultParamHandler (const String &name)
	Constructor with name that is displayed in error messages. More...

	DefaultParamHandler (const DefaultParamHandler &rhs)
	Copy constructor. More...

virtual	~DefaultParamHandler ()
	Destructor. More...

virtual DefaultParamHandler &	operator= (const DefaultParamHandler &rhs)
	Assignment operator. More...

virtual bool	operator== (const DefaultParamHandler &rhs) const
	Equality operator. More...

void	setParameters (const Param &param)
	Sets the parameters. More...

const Param &	getParameters () const
	Non-mutable access to the parameters. More...

const Param &	getDefaults () const
	Non-mutable access to the default parameters. More...

const String &	getName () const
	Non-mutable access to the name. More...

void	setName (const String &name)
	Mutable access to the name. More...

const std::vector< String > &	getSubsections () const
	Non-mutable access to the registered subsections. More...

Static Public Member Functions
static BaseModel< D > *	create ()
	create new ProductModel object (needed by Factory) More...

static const String	getProductName ()
	Returns the name of the model. More...

Static Public Member Functions inherited from BaseModel< 2 >
static void	registerChildren ()
	register all derived classes here (implemented in file BaseModel_impl.h) More...

Static Public Member Functions inherited from DefaultParamHandler
static void	writeParametersToMetaValues (const Param &write_this, MetaInfoInterface &write_here, const String &prefix="")
	Writes all parameters to meta values. More...

Protected Member Functions
void	updateMembers_ () override
	This method is used to update extra member variables at the end of the setParameters() method. More...

Protected Member Functions inherited from BaseModel< 2 >
void	updateMembers_ () override
	This method is used to update extra member variables at the end of the setParameters() method. More...

Protected Member Functions inherited from DefaultParamHandler
void	defaultsToParam_ ()
	Updates the parameters after the defaults have been set in the constructor. More...

Protected Attributes
std::vector< BaseModel< 1 > * >	distributions_

IntensityType	scale_

Protected Attributes inherited from BaseModel< 2 >
IntensityType	cut_off_

Protected Attributes inherited from DefaultParamHandler
Param	param_
	Container for current parameters. More...

Param	defaults_
	Container for default parameters. This member should be filled in the constructor of derived classes! More...

std::vector< String >	subsections_
	Container for registered subsections. This member should be filled in the constructor of derived classes! More...

String	error_name_
	Name that is displayed in error messages during the parameter checking. More...

bool	check_defaults_
	If this member is set to false no checking if parameters in done;. More...

bool	warn_empty_defaults_
	If this member is set to false no warning is emitted when defaults are empty;. More...

Detailed Description

template<>
class OpenMS::ProductModel< 2 >

The class template is only implemented for D=2 because we use Peak2D here.

Member Typedef Documentation

◆ IntensityType

typedef double IntensityType

◆ PositionType

typedef DPosition<D> PositionType

◆ SamplesType

typedef BaseModel<D>::SamplesType SamplesType

Member Enumeration Documentation

◆ anonymous enum

anonymous enum

Number of dimensions.

Enumerator
D

Constructor & Destructor Documentation

◆ ProductModel() [1/2]

ProductModel ( )

inline

Default constructor.

References Peak2D::shortDimensionName().

◆ ProductModel() [2/2]

ProductModel ( const ProductModel< 2 > & source )

inline

copy constructor

References ModelDescription< D >::createModel().

◆ ~ProductModel()

~ProductModel ( )

inlineoverride

destructor

Member Function Documentation

◆ create()

static BaseModel<D>* create ( )

inlinestatic

create new ProductModel object (needed by Factory)

◆ getIntensity()

IntensityType getIntensity ( const PositionType & pos ) const

inlineoverridevirtual

intensity equals product of intensities in each dimension

Implements BaseModel< 2 >.

◆ getModel()

BaseModel<1>* getModel ( UInt dim ) const

inline

References OPENMS_PRECONDITION.

◆ getProductName()

static const String getProductName ( )

inlinestatic

Returns the name of the model.

◆ getSamples()

void getSamples ( SamplesType & cont ) const

inlineoverridevirtual

get reasonable set of samples from the model (i.e. for printing)

Implements BaseModel< 2 >.

◆ getScale()

IntensityType getScale ( ) const

inline

return the intensity scaling factor

◆ operator=()

virtual ProductModel& operator= ( const ProductModel< 2 > & source )

inlinevirtual

assignment operator

References ModelDescription< D >::createModel(), and BaseModel< D >::operator=().

◆ setModel()

ProductModel& setModel	(	UInt	dim,
		BaseModel< 1 > *	dist
	)

inline

set model dist for dimension dim

dist is supposed to be allocated by new because it will be freed if ProductModel is destroyed or the model for that dimensions changes. For that reason no model dist should be assigned to multiple ProductModels.
ProductModel parameters are set when calling ProductModel::getParameters().

References OPENMS_PRECONDITION, and Peak2D::shortDimensionName().

◆ setScale()

void setScale ( IntensityType scale )

inline

set the intensity scaling factor

◆ updateMembers_()

void updateMembers_ ( )

inlineoverrideprotectedvirtual

This method is used to update extra member variables at the end of the setParameters() method.

Also call it at the end of the derived classes' copy constructor and assignment operator.

The default implementation is empty.

Reimplemented from DefaultParamHandler.

References Param::copy(), Peak2D::shortDimensionName(), and BaseModel< D >::updateMembers_().

Member Data Documentation

◆ distributions_

std::vector<BaseModel<1> *> distributions_

protected

◆ scale_

IntensityType scale_

protected

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

template<> class OpenMS::ProductModel< 2 >

Member Typedef Documentation

◆ IntensityType

◆ PositionType

◆ SamplesType

Member Enumeration Documentation

◆ anonymous enum

Constructor & Destructor Documentation

◆ ProductModel() [1/2]

◆ ProductModel() [2/2]

◆ ~ProductModel()

Member Function Documentation

◆ create()

◆ getIntensity()

◆ getModel()

◆ getProductName()

◆ getSamples()

◆ getScale()

◆ operator=()

◆ setModel()

◆ setScale()

◆ updateMembers_()

Member Data Documentation

◆ distributions_

◆ scale_

template<>
class OpenMS::ProductModel< 2 >