#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMS.h>
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| ~LCMS () |
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| LCMS (std::string) |
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| LCMS () |
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| LCMS (const LCMS *) |
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| LCMS (const LCMS &) |
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void | show_info () |
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LCMS & | operator= (const LCMS &) |
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void | order_by_mass () |
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float | compare_feature_mass (const void *, const void *) |
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void | tag_peaks_with_spectrum_ID () |
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int | get_nb_common_peaks (int) |
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void | clear_feature_list () |
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std::vector< SHFeature > | get_feature_list () |
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std::vector< SHFeature > * | get_feature_list_reference () |
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bool | check_feature_list_empty () |
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std::vector< SHFeature >::iterator | get_feature_list_begin () |
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std::vector< SHFeature >::iterator | get_feature_list_end () |
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void | add_feature (SHFeature *in) |
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void | remove_feature_by_ID (SHFeature *) |
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void | remove_feature_by_ID (int) |
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void | remove_feature (SHFeature *) |
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void | remove_feature (int i) |
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std::vector< SHFeature >::iterator | remove_feature_from_list (std::vector< SHFeature >::iterator in) |
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unsigned int | get_nb_features () |
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std::string | get_spec_name () |
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void | set_spec_name (std::string in) |
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int | get_spectrum_ID () |
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void | set_spectrum_ID (int in) |
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void | setFeatureLCMSID () |
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SHFeature * | find_feature_by_ID (int) |
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void | remove_raw_spec_name (int ID) |
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void | add_raw_spec_name (int ID, std::string name) |
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bool | check_raw_spec_name_empty () |
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std::map< int, std::string >::iterator | get_raw_spec_name_start () |
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std::map< int, std::string >::iterator | get_raw_spec_name_end () |
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std::map< int, std::string > | get_raw_spec_name_map () |
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int | get_nb_raw_specs () |
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std::string | get_raw_spec_name (int ID) |
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bool | check_LCMS_name (std::string) |
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bool | find_LC_MS_by_ID (int) |
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void | add_raw_spec_name_map (std::map< int, std::string > in) |
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int | get_nb_identified_features () |
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int | get_nb_identified_features (double PepProb_T) |
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void | add_alignment_error (double TR, double ERROR_UP, double ERROR_DOWN) |
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void | get_alignment_error (double, double *, double *) |
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void | set_MASTER_ID (int in) |
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int | get_MASTER_ID () |
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◆ ~LCMS()
◆ LCMS() [1/4]
◆ LCMS() [2/4]
◆ LCMS() [3/4]
◆ LCMS() [4/4]
◆ add_alignment_error()
◆ add_feature()
◆ add_raw_spec_name()
void add_raw_spec_name |
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int |
ID, |
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std::string |
name |
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) |
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◆ add_raw_spec_name_map()
void add_raw_spec_name_map |
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std::map< int, std::string > |
in | ) |
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◆ check_feature_list_empty()
bool check_feature_list_empty |
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◆ check_LCMS_name()
bool check_LCMS_name |
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std::string |
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◆ check_raw_spec_name_empty()
bool check_raw_spec_name_empty |
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◆ clear_feature_list()
void clear_feature_list |
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◆ compare_feature_mass()
float compare_feature_mass |
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const void * |
, |
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const void * |
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) |
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◆ find_feature_by_ID()
◆ find_LC_MS_by_ID()
bool find_LC_MS_by_ID |
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int |
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◆ get_alignment_error()
◆ get_feature_list()
◆ get_feature_list_begin()
std::vector<SHFeature>::iterator get_feature_list_begin |
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◆ get_feature_list_end()
std::vector<SHFeature>::iterator get_feature_list_end |
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◆ get_feature_list_reference()
std::vector<SHFeature>* get_feature_list_reference |
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◆ get_MASTER_ID()
◆ get_nb_common_peaks()
int get_nb_common_peaks |
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int |
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◆ get_nb_features()
unsigned int get_nb_features |
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◆ get_nb_identified_features() [1/2]
int get_nb_identified_features |
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◆ get_nb_identified_features() [2/2]
int get_nb_identified_features |
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double |
PepProb_T | ) |
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◆ get_nb_raw_specs()
◆ get_raw_spec_name()
std::string get_raw_spec_name |
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int |
ID | ) |
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◆ get_raw_spec_name_end()
std::map<int, std::string>::iterator get_raw_spec_name_end |
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◆ get_raw_spec_name_map()
std::map<int, std::string> get_raw_spec_name_map |
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◆ get_raw_spec_name_start()
std::map<int, std::string>::iterator get_raw_spec_name_start |
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◆ get_spec_name()
std::string get_spec_name |
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◆ get_spectrum_ID()
◆ operator=()
◆ order_by_mass()
◆ remove_feature() [1/2]
void remove_feature |
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int |
i | ) |
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◆ remove_feature() [2/2]
◆ remove_feature_by_ID() [1/2]
void remove_feature_by_ID |
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int |
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◆ remove_feature_by_ID() [2/2]
◆ remove_feature_from_list()
std::vector<SHFeature>::iterator remove_feature_from_list |
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std::vector< SHFeature >::iterator |
in | ) |
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◆ remove_raw_spec_name()
void remove_raw_spec_name |
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int |
ID | ) |
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◆ set_MASTER_ID()
void set_MASTER_ID |
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int |
in | ) |
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◆ set_spec_name()
void set_spec_name |
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std::string |
in | ) |
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◆ set_spectrum_ID()
void set_spectrum_ID |
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int |
in | ) |
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◆ setFeatureLCMSID()
void setFeatureLCMSID |
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◆ show_info()
◆ tag_peaks_with_spectrum_ID()
void tag_peaks_with_spectrum_ID |
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◆ ALIGNMENT_ERROR
◆ feature_list
◆ MASTER_ID
◆ MINIMAL_PEP_PROPHET_THERSHOLD
double MINIMAL_PEP_PROPHET_THERSHOLD |
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static |
◆ raw_spec_names
std::map<int, std::string> raw_spec_names |
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private |
◆ spec_name
◆ spectrum_id