FASTAFile::FASTAEntry Struct Reference

FASTA entry type (identifier, description and sequence) More...

#include <OpenMS/FORMAT/FASTAFile.h>

Collaboration diagram for FASTAFile::FASTAEntry:

Public Member Functions
	FASTAEntry ()
	FASTAEntry (String id, String desc, String seq)
	FASTAEntry (const FASTAEntry &rhs)
	FASTAEntry (FASTAEntry &&rhs) noexcept
FASTAEntry &	operator= (const FASTAEntry &rhs)
bool	operator== (const FASTAEntry &rhs) const
bool	headerMatches (const FASTAEntry &rhs) const
bool	sequenceMatches (const FASTAEntry &rhs) const

Public Attributes
String	identifier
String	description
String	sequence

Detailed Description

FASTA entry type (identifier, description and sequence)

The first String corresponds to the identifier that is written after the > in the FASTA file. The part after the first whitespace is stored in description and the text from the next line until the next > (exclusive) is stored in sequence.

Constructor & Destructor Documentation

FASTAEntry() [1/4]

FASTAEntry ( )

inline

FASTAEntry() [2/4]

FASTAEntry ( String  id, String  desc, String  seq  )

inline

FASTAEntry() [3/4]

FASTAEntry ( const FASTAEntry &  rhs )

inline

FASTAEntry() [4/4]

FASTAEntry ( FASTAEntry &&  rhs )

inlinenoexcept

Member Function Documentation

headerMatches()

bool headerMatches ( const FASTAEntry &  rhs ) const

inline

References FASTAFile::FASTAEntry::description, and FASTAFile::FASTAEntry::identifier.

operator=()

FASTAEntry& operator= ( const FASTAEntry &  rhs )

inline

References FASTAFile::FASTAEntry::description, FASTAFile::FASTAEntry::identifier, and FASTAFile::FASTAEntry::sequence.

operator==()

bool operator== ( const FASTAEntry &  rhs ) const

inline

References FASTAFile::FASTAEntry::description, FASTAFile::FASTAEntry::identifier, and FASTAFile::FASTAEntry::sequence.

sequenceMatches()

bool sequenceMatches ( const FASTAEntry &  rhs ) const

inline

References FASTAFile::FASTAEntry::sequence.

Member Data Documentation

description

String description

Referenced by FASTAFile::FASTAEntry::headerMatches(), FASTAFile::FASTAEntry::operator=(), FASTAFile::FASTAEntry::operator==(), and PeptideIndexing::run().

identifier

String identifier

Referenced by IDFilter::GetMatchingItems< OpenMS::PeptideEvidence, OpenMS::FASTAFile::FASTAEntry >::getKey(), FASTAFile::FASTAEntry::headerMatches(), FASTAFile::FASTAEntry::operator=(), and FASTAFile::FASTAEntry::operator==().

sequence

String sequence

Referenced by FASTAFile::FASTAEntry::operator=(), FASTAFile::FASTAEntry::operator==(), PeptideIndexing::run(), and FASTAFile::FASTAEntry::sequenceMatches().