OpenMS
2.6.0
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This is the complete list of members for IdentificationDataConverter, including all inherited members.
addMzTabMoleculeParentContext_(const IdentificationData::MoleculeParentMatch &match, MzTabOligonucleotideSectionRow &row) | IdentificationDataConverter | protectedstatic |
addMzTabMoleculeParentContext_(const IdentificationData::MoleculeParentMatch &match, MzTabPeptideSectionRow &row) | IdentificationDataConverter | protectedstatic |
addMzTabSEScores_(const std::map< IdentificationData::ScoreTypeRef, Size > &scores, std::map< Size, MzTabParameter > &output) | IdentificationDataConverter | protectedstatic |
exportDBSearchParameters_(IdentificationData::SearchParamRef ref) | IdentificationDataConverter | protectedstatic |
exportIDs(const IdentificationData &id_data, std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, bool export_oligonucleotides=false) | IdentificationDataConverter | static |
exportMSRunInformation_(IdentificationData::ProcessingStepRef step_ref, ProteinIdentification &protein) | IdentificationDataConverter | protectedstatic |
exportMzTab(const IdentificationData &id_data) | IdentificationDataConverter | static |
exportParentMoleculeToMzTab_(const IdentificationData::ParentMolecule &parent, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | inlineprotectedstatic |
exportPeptideOrOligoToMzTab_(const IdentSeq &identified, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | inlineprotectedstatic |
exportQueryMatchToMzTab_(const String &sequence, const IdentificationData::MoleculeQueryMatch &match, double calc_mass, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map, std::map< IdentificationData::InputFileRef, Size > &file_map) | IdentificationDataConverter | inlineprotectedstatic |
exportStepsAndScoresToMzTab_(const IdentificationData::AppliedProcessingSteps &steps_and_scores, MzTabParameterList &steps_out, std::map< Size, MzTabDouble > &scores_out, std::map< IdentificationData::ScoreTypeRef, Size > &score_map) | IdentificationDataConverter | protectedstatic |
importDBSearchParameters_(const ProteinIdentification::SearchParameters &pisp, IdentificationData &id_data) | IdentificationDataConverter | protectedstatic |
importIDs(IdentificationData &id_data, const std::vector< ProteinIdentification > &proteins, const std::vector< PeptideIdentification > &peptides) | IdentificationDataConverter | static |
importSequences(IdentificationData &id_data, const std::vector< FASTAFile::FASTAEntry > &fasta, IdentificationData::MoleculeType type=IdentificationData::MoleculeType::PROTEIN, const String &decoy_pattern="") | IdentificationDataConverter | static |