MzIdentMLValidator Member List

This is the complete list of members for MzIdentMLValidator, including all inherited members.

accession_att_	SemanticValidator	protected
ActionMode enum name	XMLHandler	protected
asBool_(const String &in)	XMLHandler	inlineprotected
asDateTime_(String date_string)	XMLHandler	inlineprotected
asDouble_(const String &in)	XMLHandler	inlineprotected
asFloat_(const String &in)	XMLHandler	inlineprotected
asInt_(const String &in)	XMLHandler	inlineprotected
asInt_(const XMLCh *in)	XMLHandler	inlineprotected
asUInt_(const String &in)	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
characters(const XMLCh *const chars, const XMLSize_t) override	SemanticValidator	protected
check_term_value_types_	SemanticValidator	protected
check_units_	SemanticValidator	protected
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids)	XMLHandler	protected
cv_	SemanticValidator	protected
cv_tag_	SemanticValidator	protected
cv_terms_	XMLHandler	protected
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)	XMLHandler	inlineprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) override	SemanticValidator	protected
enforced_encoding_	XMLFile	protected
enforceEncoding_(const String &encoding)	XMLFile	protected
equal_(const XMLCh *a, const XMLCh *b) const	XMLHandler	inlineprotected
error(const xercesc::SAXParseException &exception) override	XMLHandler	protected
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
error_message_	XMLHandler	mutableprotected
errors_	SemanticValidator	protected
errorString()	XMLHandler	protected
expectList_(const String &str) const	XMLHandler	inlineprivate
fatalError(const xercesc::SAXParseException &exception) override	XMLHandler	protected
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
file_	XMLHandler	protected
fulfilled_	SemanticValidator	protected
getCVTerm_(const xercesc::Attributes &attributes, CVTerm &parsed_term)	SemanticValidator	protectedvirtual
getLoadDetail() const	XMLHandler	protectedvirtual
getPath_(UInt remove_from_end=0) const	SemanticValidator	protectedvirtual
getVersion() const	XMLFile
handleTerm_(const String &path, const CVTerm &parsed_term)	SemanticValidator	protectedvirtual
isValid(const String &filename, std::ostream &os)	XMLFile
LD_ALLDATA enum value	XMLHandler	protected
LD_COUNTS_WITHOPTIONS enum value	XMLHandler	protected
LD_RAWCOUNTS enum value	XMLHandler	protected
LOAD enum value	XMLHandler	protected
load_detail_	XMLHandler	protected
LOADDETAIL enum name	XMLHandler	protected
locateTerm(const String &path, const CVTerm &parsed_term) const	SemanticValidator
mapping_	SemanticValidator	protected
MzIdentMLValidator(const CVMappings &mapping, const ControlledVocabulary &cv)	MzIdentMLValidator
MzIdentMLValidator()	MzIdentMLValidator	private
MzIdentMLValidator(const MzIdentMLValidator &rhs)	MzIdentMLValidator	private
name_att_	SemanticValidator	protected
open_tags_	SemanticValidator	protected
operator=(const MzIdentMLValidator &rhs)	MzIdentMLValidator	private
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) const	XMLHandler	inlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) const	XMLHandler	inlineprotected
parse_(const String &filename, XMLHandler *handler)	XMLFile	protected
parseBuffer_(const std::string &buffer, XMLHandler *handler)	XMLFile	protected
reset()	XMLHandler	protected
rules_	SemanticValidator	protected
save_(const String &filename, XMLHandler *handler) const	XMLFile	protected
schema_location_	XMLFile	protected
schema_version_	XMLFile	protected
SemanticValidator(const CVMappings &mapping, const ControlledVocabulary &cv)	SemanticValidator
SemanticValidator()	SemanticValidator	private
SemanticValidator(const SemanticValidator &rhs)	SemanticValidator	private
setAccessionAttribute(const String &accession)	SemanticValidator
setCheckTermValueTypes(bool check)	SemanticValidator
setCheckUnits(bool check)	SemanticValidator
setLoadDetail(const LOADDETAIL d)	XMLHandler	protectedvirtual
setNameAttribute(const String &name)	SemanticValidator
setTag(const String &tag)	SemanticValidator
setUnitAccessionAttribute(const String &accession)	SemanticValidator
setUnitNameAttribute(const String &name)	SemanticValidator
setValueAttribute(const String &value)	SemanticValidator
sm_	XMLHandler	protected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) override	SemanticValidator	protected
STORE enum value	XMLHandler	protected
unit_accession_att_	SemanticValidator	protected
unit_name_att_	SemanticValidator	protected
validate(const String &filename, StringList &errors, StringList &warnings)	SemanticValidator
value_att_	SemanticValidator	protected
version_	XMLHandler	protected
warning(const xercesc::SAXParseException &exception) override	XMLHandler	protected
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) const	XMLHandler	protected
warnings_	SemanticValidator	protected
writeTo(std::ostream &)	XMLHandler	protectedvirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) const	XMLHandler	protected
writeXMLEscape(const String &to_escape)	XMLHandler	inlineprotectedstatic
XMLFile()	XMLFile
XMLFile(const String &schema_location, const String &version)	XMLFile
XMLHandler(const String &filename, const String &version)	XMLHandler	protected
XMLHandler()	XMLHandler	private
~MzIdentMLValidator() override	MzIdentMLValidator
~SemanticValidator() override	SemanticValidator
~XMLFile()	XMLFile	virtual
~XMLHandler() override	XMLHandler	protected