OpenMS  2.6.0
MzQuantMLHandler Member List

This is the complete list of members for MzQuantMLHandler, including all inherited members.

ActionMode enum nameXMLHandler
asBool_(const String &in)XMLHandlerinlineprotected
asDateTime_(String date_string)XMLHandlerinlineprotected
asDouble_(const String &in)XMLHandlerinlineprotected
asFloat_(const String &in)XMLHandlerinlineprotected
asInt_(const String &in)XMLHandlerinlineprotected
asInt_(const XMLCh *in)XMLHandlerinlineprotected
asUInt_(const String &in)XMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDouble_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsDoubleList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsInt_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsIntList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsString_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
attributeAsStringList_(const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
cf_cf_obj_MzQuantMLHandlerprivate
characters(const XMLCh *const chars, const XMLSize_t length) overrideMzQuantMLHandler
checkUniqueIdentifiers_(const std::vector< ProteinIdentification > &prot_ids)XMLHandler
cm_cf_ids_MzQuantMLHandlerprivate
cmsq_MzQuantMLHandlerprotected
current_assay_MzQuantMLHandlerprivate
current_cf_id_MzQuantMLHandlerprivate
current_col_types_MzQuantMLHandlerprivate
current_count_MzQuantMLHandlerprivate
current_dm_values_MzQuantMLHandlerprivate
current_dp_MzQuantMLHandlerprivate
current_files_MzQuantMLHandlerprivate
current_id_MzQuantMLHandlerprivate
current_orderedps_MzQuantMLHandlerprivate
current_pas_MzQuantMLHandlerprivate
current_row_MzQuantMLHandlerprivate
current_sws_MzQuantMLHandlerprivate
cv_MzQuantMLHandlerprotected
cv_terms_XMLHandlerprotected
cvp_stack_MzQuantMLHandlerprivate
cvStringToEnum_(const Size section, const String &term, const char *message, const SignedSize result_on_error=0)XMLHandlerinlineprotected
endElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname) overrideMzQuantMLHandler
equal_(const XMLCh *a, const XMLCh *b) constXMLHandlerinlineprotected
error(const xercesc::SAXParseException &exception) overrideXMLHandler
error(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
error_message_XMLHandlermutableprotected
errorString()XMLHandler
expectList_(const String &str) constXMLHandlerinlineprivate
f_cf_ids_MzQuantMLHandlerprivate
f_f_obj_MzQuantMLHandlerprivate
fatalError(const xercesc::SAXParseException &exception) overrideXMLHandler
fatalError(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
file_XMLHandlerprotected
getChildWithName_(const String &parent_accession, const String &name) constMzQuantMLHandlerprotected
getLoadDetail() constXMLHandlervirtual
handleCVParam_(const String &parent_parent_tag, const String &parent_tag, const String &accession, const String &name, const String &value, const xercesc::Attributes &attributes, const String &cv_ref, const String &unit_accession="")MzQuantMLHandlerprotected
handleUserParam_(const String &parent_parent_tag, const String &parent_tag, const String &name, const String &type, const String &value)MzQuantMLHandlerprotected
LD_ALLDATA enum valueXMLHandler
LD_COUNTS_WITHOPTIONS enum valueXMLHandler
LD_RAWCOUNTS enum valueXMLHandler
LOAD enum valueXMLHandler
load_detail_XMLHandlerprotected
LOADDETAIL enum nameXMLHandler
logger_MzQuantMLHandlerprotected
msq_MzQuantMLHandlerprotected
MzQuantMLHandler(const MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger)MzQuantMLHandler
MzQuantMLHandler(MSQuantifications &msq, const String &filename, const String &version, const ProgressLogger &logger)MzQuantMLHandler
MzQuantMLHandler()MzQuantMLHandlerprivate
MzQuantMLHandler(const MzQuantMLHandler &rhs)MzQuantMLHandlerprivate
numden_r_ids_MzQuantMLHandlerprivate
open_tags_XMLHandlerprotected
operator=(const MzQuantMLHandler &rhs)MzQuantMLHandlerprivate
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDouble_(double &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsDoubleList_(DoubleList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsInt_(Int &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsIntList_(IntList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsString_(String &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsStringList_(StringList &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const char *name) constXMLHandlerinlineprotected
optionalAttributeAsUInt_(UInt &value, const xercesc::Attributes &a, const XMLCh *name) constXMLHandlerinlineprotected
r_r_obj_MzQuantMLHandlerprivate
r_rtemp_MzQuantMLHandlerprivate
reset()XMLHandler
setLoadDetail(const LOADDETAIL d)XMLHandlervirtual
sm_XMLHandlerprotected
startElement(const XMLCh *const, const XMLCh *const, const XMLCh *const qname, const xercesc::Attributes &attributes) overrideMzQuantMLHandler
STORE enum valueXMLHandler
tag_MzQuantMLHandlerprotected
up_stack_MzQuantMLHandlerprivate
version_XMLHandlerprotected
warning(const xercesc::SAXParseException &exception) overrideXMLHandler
warning(ActionMode mode, const String &msg, UInt line=0, UInt column=0) constXMLHandler
writeCVParams_(String &s, const Map< String, std::vector< CVTerm > > &, UInt indent)MzQuantMLHandlerprotected
writeFeature_(String &feature_xml, const std::vector< FeatureMap > &fm, UInt indentation_level)MzQuantMLHandlerprotected
writeTo(std::ostream &os) overrideMzQuantMLHandlervirtual
writeUserParam_(const String &tag_name, std::ostream &os, const MetaInfoInterface &meta, UInt indent) constXMLHandlerprotected
writeUserParams_(std::ostream &os, const MetaInfoInterface &meta, UInt indent)MzQuantMLHandlerprotected
writeUserParams_(String &s, const MetaInfoInterface &meta, UInt indent)MzQuantMLHandlerprotected
writeXMLEscape(const String &to_escape)XMLHandlerinlinestatic
XMLHandler(const String &filename, const String &version)XMLHandler
XMLHandler()XMLHandlerprivate
~MzQuantMLHandler() overrideMzQuantMLHandler
~XMLHandler() overrideXMLHandler